View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9401_low_73 (Length: 328)
Name: NF9401_low_73
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9401_low_73 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 40129063 - 40129372
Alignment:
| Q |
1 |
aaaggaattagcaccttcaggtatgtctgcagctatgacagcaagttctgctaatatccataaacagtatttcacaaaccatgggtactcagctttacaa |
100 |
Q |
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| T |
40129063 |
aaaggaattagcaccttcaggtatgtctgcagctatgacagcaagttctgctaatatccataaacagtatttcacaaaccatgggtactcagctttacaa |
40129162 |
T |
|
| Q |
101 |
atttctgaaaggtgtttacctgtcaaaatttgaacaacaaatatcaaataatggtaatatcatagagaatgtcttccatagatatttgagcttttgttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40129163 |
atttctgaaaggtgtttacctgtcaaaatttgaacaacaaatatcaaataatggtaatatcatagagaatgtcttccatagatatttgagcttttgttct |
40129262 |
T |
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| Q |
201 |
tgtgaaaacttctttagataggaaaagtgnnnnnnnnagacataatccaaaattattatttgattaactaattaggataagggacttggatatatgaata |
300 |
Q |
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| T |
40129263 |
tgtgaaaacttctttagataggaaaagtg-tttttttagacataatccaaaattattatttgattaactaattaggataagggacttggatatatgaata |
40129361 |
T |
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| Q |
301 |
tactatgatat |
311 |
Q |
| |
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||||||||||| |
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| T |
40129362 |
tactatgatat |
40129372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 127
Target Start/End: Original strand, 40140105 - 40140219
Alignment:
| Q |
13 |
accttcaggtatgtctgcagctatgacagcaagttctgctaatatccataaacagtatttcacaaaccatgggtactcagctttacaaatttctgaaagg |
112 |
Q |
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||||||||||||||| || ||||||||||||| |||||||||| |||||| || || |||||||| |||| || ||| ||| ||| | |||||||||| |
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| T |
40140105 |
accttcaggtatgtcagctgctatgacagcaacctctgctaataaccataagcaatacttcacaaataatggatattcaacttcacatacttctgaaagg |
40140204 |
T |
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| Q |
113 |
tgtttacctgtcaaa |
127 |
Q |
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||||| |||| |||| |
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| T |
40140205 |
tgtttgcctgccaaa |
40140219 |
T |
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