View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9401_low_75 (Length: 318)
Name: NF9401_low_75
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9401_low_75 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 20 - 300
Target Start/End: Original strand, 27425070 - 27425350
Alignment:
| Q |
20 |
gtaaacattttatatctcggtgacttgtattagtagatttgaatatggattacatgttcactcgtaggtaataacacaatattctcattcaggtttacct |
119 |
Q |
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| T |
27425070 |
gtaaacattttatatctcggtgatttgtattagtagatttgaatatggattacatgttcactcgtaggtaataacacaatattctcattcaggtttacct |
27425169 |
T |
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| Q |
120 |
tgattttggattggcaattccaaagcttagtgtacatgggatgatttcatcattgaaagatattttagagctggctccaataaataaggtgacgttataa |
219 |
Q |
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| T |
27425170 |
tgattttggattggcaattccaaagcttagtgtacatgggatgatttcatcattgaaagatattttagagctggctccaataaataaggtgacattataa |
27425269 |
T |
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| Q |
220 |
tgaagttaaataattattcaccgagatcatgaattttcagataaatatttcttgcgttgcaggtgatgttcagtactgatg |
300 |
Q |
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| T |
27425270 |
gcaagttaaataattattcaccgagatcatgaattttcagataaatatttcttgcattgcaggtgatgttcagtactgatg |
27425350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 20 - 219
Target Start/End: Original strand, 27404042 - 27404243
Alignment:
| Q |
20 |
gtaaacattttatatctcggtgacttgt--attagtagatttgaatatggattacatgttcactcgtaggtaataacacaatattctcattcaggtttac |
117 |
Q |
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| T |
27404042 |
gtaaacatttcataactcagtgacttgttcattactagatttgaatatggattacatgttcactggtaggtaataacacaatcttctcattcaggtttac |
27404141 |
T |
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| Q |
118 |
cttgattttggattggcaattccaaagcttagtgtacatgggatgatttcatcattgaaagatattttagagctggctccaataaataaggtgacgttat |
217 |
Q |
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| T |
27404142 |
cttgattttggtctggcaattccaaagctgagtgtacatgggatgatttcatcattgaaagagcttttagagctggctccaataaataaggtgacattat |
27404241 |
T |
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| Q |
218 |
aa |
219 |
Q |
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|| |
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| T |
27404242 |
aa |
27404243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 107 - 209
Target Start/End: Original strand, 27450040 - 27450142
Alignment:
| Q |
107 |
ttcaggtttaccttgattttggattggcaattccaaagcttagtgtacatgggatgatttcatcattgaaagatattttagagctggctccaataaataa |
206 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||| |||| || |||||||| ||||||||| ||||||| |||| || |
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| T |
27450040 |
ttcaggtttaccttgattttggcttggctattccaaagcttagtgtgcatggcatggtttctgcagtgaaagatcttttagagcaggctccattaaacaa |
27450139 |
T |
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| Q |
207 |
ggt |
209 |
Q |
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||| |
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| T |
27450140 |
ggt |
27450142 |
T |
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