View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9401_low_76 (Length: 317)
Name: NF9401_low_76
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9401_low_76 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 12 - 303
Target Start/End: Complemental strand, 34873568 - 34873277
Alignment:
| Q |
12 |
agagacccatgctaatcaaaactgtcatttttaggtcactgaagcaaaatctctgttgaaagaagctcttcaagctgaggtcggattgcctgttgacaag |
111 |
Q |
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| T |
34873568 |
agagacccatgctaatcaaaactgtcatttttaggtcactgaagcaaaatctctgttgaaagaagctcttcaagctgaggtcggattgcctgttgacaag |
34873469 |
T |
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| Q |
112 |
agtatccctttgataggattcattggcaggctagaagagcagaaaggttctgatattcttgttgaagctatcgcaaagttcattgaccagaatgttcaga |
211 |
Q |
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| T |
34873468 |
agtatccctttgataggattcattggcaggctagaagagcagaaaggttctgatattcttgttgaagctatcgcaaagttcattgaccagaatgttcaga |
34873369 |
T |
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| Q |
212 |
taatagttcttgtaagtgctttacttgatttttcttgtcctttctgatactattacctaaacaaagcttcgctgatgattcatattcttttt |
303 |
Q |
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| T |
34873368 |
taatagttcttgtaagtgctttacttgatttttcttgtcctttctgatactattacctaaacaaagcttctctgatgattcatattcttttt |
34873277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 173
Target Start/End: Original strand, 8936545 - 8936650
Alignment:
| Q |
68 |
tgaaagaagctcttcaagctgaggtcggattgcctgttgacaagagtatccctttgataggattcattggcaggctagaagagcagaaaggttctgatat |
167 |
Q |
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|||||||||| || ||||| || || |||||||| |||||||| | ||| ||| | || | |||||||| || || |||||||| |||||||||||||| |
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| T |
8936545 |
tgaaagaagcactccaagcagaagttggattgccggttgacaaaaatattcctctcattgctttcattggtagacttgaagagcaaaaaggttctgatat |
8936644 |
T |
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| Q |
168 |
tcttgt |
173 |
Q |
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| T |
8936645 |
tcttgt |
8936650 |
T |
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