View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9401_low_8 (Length: 604)

Name: NF9401_low_8
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9401_low_8
NF9401_low_8
[»] chr3 (33 HSPs)
chr3 (39-439)||(33809007-33809385)
chr3 (525-590)||(33808856-33808921)
chr3 (234-317)||(2299930-2300013)
chr3 (226-317)||(12747873-12747963)
chr3 (231-317)||(25317450-25317536)
chr3 (272-375)||(43346854-43346957)
chr3 (275-337)||(39336330-39336392)
chr3 (272-317)||(12114683-12114728)
chr3 (244-312)||(22304074-22304143)
chr3 (235-375)||(37990702-37990843)
chr3 (272-312)||(29645028-29645068)
chr3 (233-375)||(21832406-21832546)
chr3 (273-375)||(33175724-33175829)
chr3 (276-317)||(1634436-1634477)
chr3 (270-307)||(45395784-45395821)
chr3 (272-312)||(25739551-25739591)
chr3 (272-312)||(39914244-39914284)
chr3 (272-312)||(42342514-42342554)
chr3 (273-341)||(54451273-54451341)
chr3 (273-312)||(8327897-8327936)
chr3 (272-307)||(15773184-15773219)
chr3 (272-315)||(32463024-32463067)
chr3 (273-314)||(9240142-9240183)
chr3 (271-312)||(54017942-54017983)
chr3 (272-312)||(3135587-3135627)
chr3 (272-380)||(15772846-15772954)
chr3 (272-312)||(25755386-25755426)
chr3 (275-307)||(29644712-29644744)
chr3 (272-312)||(31190009-31190049)
chr3 (272-312)||(43346642-43346682)
chr3 (272-312)||(45901705-45901745)
chr3 (272-312)||(52634668-52634708)
chr3 (272-312)||(53577356-53577396)
[»] chr5 (23 HSPs)
chr5 (226-376)||(31509569-31509719)
chr5 (234-317)||(24489325-24489406)
chr5 (239-317)||(36522017-36522093)
chr5 (58-137)||(3622802-3622881)
chr5 (271-317)||(36527204-36527250)
chr5 (273-317)||(36568688-36568732)
chr5 (273-317)||(41632775-41632819)
chr5 (282-345)||(26074320-26074383)
chr5 (272-349)||(12662741-12662818)
chr5 (273-317)||(1028638-1028682)
chr5 (233-312)||(26074908-26074988)
chr5 (273-312)||(13415886-13415925)
chr5 (272-307)||(15370091-15370126)
chr5 (272-375)||(34753088-34753191)
chr5 (272-307)||(35150739-35150774)
chr5 (272-307)||(35151030-35151065)
chr5 (60-151)||(36526990-36527080)
chr5 (275-312)||(35150002-35150039)
chr5 (272-312)||(299481-299521)
chr5 (273-317)||(26074267-26074311)
chr5 (272-312)||(36492343-36492383)
chr5 (50-86)||(36630671-36630707)
chr5 (276-312)||(40296441-40296477)
[»] chr2 (31 HSPs)
chr2 (232-375)||(30323416-30323559)
chr2 (271-317)||(43443103-43443149)
chr2 (243-375)||(29873600-29873732)
chr2 (233-317)||(28531435-28531517)
chr2 (226-334)||(30313124-30313232)
chr2 (273-317)||(33954382-33954426)
chr2 (233-312)||(36785689-36785769)
chr2 (273-375)||(33561514-33561616)
chr2 (239-345)||(40733475-40733582)
chr2 (233-306)||(3673037-3673111)
chr2 (235-317)||(7598565-7598646)
chr2 (89-137)||(33561747-33561795)
chr2 (231-303)||(8904383-8904452)
chr2 (276-337)||(29874124-29874185)
chr2 (272-345)||(38796311-38796384)
chr2 (233-317)||(40679750-40679832)
chr2 (273-317)||(962591-962635)
chr2 (272-312)||(6421296-6421336)
chr2 (273-317)||(16590881-16590925)
chr2 (272-312)||(31468872-31468912)
chr2 (273-317)||(33953892-33953936)
chr2 (272-312)||(38796746-38796786)
chr2 (273-317)||(42514642-42514686)
chr2 (272-375)||(28254300-28254403)
chr2 (52-129)||(30313338-30313415)
chr2 (275-312)||(35580849-35580886)
chr2 (272-317)||(37895182-37895227)
chr2 (272-380)||(12529086-12529194)
chr2 (272-312)||(16542441-16542481)
chr2 (272-312)||(29676895-29676935)
chr2 (272-316)||(36006001-36006045)
[»] chr8 (20 HSPs)
chr8 (226-337)||(4154381-4154492)
chr8 (233-317)||(40518537-40518619)
chr8 (273-337)||(4154767-4154831)
chr8 (63-137)||(4154580-4154654)
chr8 (238-317)||(147786-147866)
chr8 (273-337)||(20995502-20995566)
chr8 (233-312)||(30359561-30359641)
chr8 (273-317)||(41972151-41972195)
chr8 (280-375)||(3669687-3669782)
chr8 (274-317)||(12283867-12283910)
chr8 (236-313)||(8918889-8918967)
chr8 (272-345)||(9309347-9309420)
chr8 (52-213)||(9620514-9620675)
chr8 (273-317)||(9608738-9608782)
chr8 (273-317)||(9620797-9620841)
chr8 (272-312)||(3038416-3038456)
chr8 (233-281)||(5897122-5897170)
chr8 (273-313)||(18645712-18645752)
chr8 (69-132)||(41039272-41039336)
chr8 (276-312)||(45123002-45123038)
[»] chr6 (15 HSPs)
chr6 (231-375)||(8481878-8482021)
chr6 (196-337)||(6071051-6071189)
chr6 (233-375)||(10074054-10074194)
chr6 (270-337)||(33605644-33605711)
chr6 (239-375)||(10074426-10074560)
chr6 (233-345)||(16108015-16108128)
chr6 (236-307)||(10073745-10073814)
chr6 (276-337)||(33605971-33606032)
chr6 (272-312)||(2579998-2580038)
chr6 (272-308)||(7588354-7588390)
chr6 (280-375)||(3409259-3409354)
chr6 (278-337)||(12071792-12071851)
chr6 (236-312)||(2579231-2579308)
chr6 (273-317)||(10911558-10911602)
chr6 (272-312)||(16454567-16454607)
[»] scaffold0113 (2 HSPs)
scaffold0113 (226-317)||(39785-39875)
scaffold0113 (51-131)||(39614-39694)
[»] chr7 (20 HSPs)
chr7 (272-317)||(118422-118467)
chr7 (233-312)||(7553977-7554057)
chr7 (272-312)||(30245486-30245526)
chr7 (272-375)||(1085679-1085782)
chr7 (233-312)||(14681464-14681542)
chr7 (272-317)||(45434628-45434673)
chr7 (272-312)||(7517572-7517612)
chr7 (273-317)||(8128562-8128606)
chr7 (273-317)||(28301664-28301708)
chr7 (275-307)||(40230422-40230454)
chr7 (273-312)||(40094520-40094559)
chr7 (272-306)||(30244693-30244727)
chr7 (275-312)||(36622955-36622992)
chr7 (272-317)||(43241487-43241532)
chr7 (277-337)||(10341829-10341889)
chr7 (272-312)||(24177427-24177467)
chr7 (272-312)||(30244262-30244302)
chr7 (272-312)||(30255331-30255371)
chr7 (272-304)||(36534918-36534950)
chr7 (272-312)||(41910720-41910760)
[»] chr1 (24 HSPs)
chr1 (233-312)||(41157327-41157407)
chr1 (233-375)||(22077558-22077698)
chr1 (233-318)||(22077242-22077325)
chr1 (273-375)||(24600377-24600479)
chr1 (272-312)||(35154165-35154205)
chr1 (233-319)||(30630757-30630841)
chr1 (273-375)||(1188651-1188753)
chr1 (232-298)||(47380258-47380324)
chr1 (273-317)||(19283576-19283620)
chr1 (269-317)||(22793267-22793315)
chr1 (273-317)||(44685449-44685493)
chr1 (272-375)||(17294569-17294672)
chr1 (272-315)||(21378164-21378207)
chr1 (272-307)||(37850731-37850766)
chr1 (273-312)||(50469207-50469246)
chr1 (272-374)||(41184489-41184591)
chr1 (272-318)||(45839619-45839665)
chr1 (272-317)||(66593-66638)
chr1 (272-317)||(9955899-9955944)
chr1 (272-317)||(39066321-39066366)
chr1 (272-312)||(34364499-34364539)
chr1 (272-312)||(34364917-34364957)
chr1 (272-312)||(37556103-37556143)
chr1 (272-312)||(41142364-41142404)
[»] chr4 (27 HSPs)
chr4 (233-315)||(2741026-2741106)
chr4 (233-375)||(36629192-36629332)
chr4 (273-317)||(39792979-39793023)
chr4 (272-375)||(34646710-34646813)
chr4 (273-315)||(2740693-2740735)
chr4 (236-317)||(3244570-3244649)
chr4 (273-375)||(28034222-28034324)
chr4 (272-317)||(12197370-12197415)
chr4 (272-312)||(1731771-1731811)
chr4 (272-312)||(39404390-39404430)
chr4 (272-312)||(52884879-52884919)
chr4 (273-312)||(52884688-52884727)
chr4 (272-306)||(3341120-3341154)
chr4 (272-317)||(16888935-16888981)
chr4 (271-312)||(3700356-3700397)
chr4 (271-312)||(41707588-41707629)
chr4 (274-307)||(44620654-44620687)
chr4 (271-308)||(45050592-45050629)
chr4 (275-311)||(3340802-3340838)
chr4 (272-312)||(4390225-4390265)
chr4 (272-312)||(10245912-10245952)
chr4 (272-312)||(22028085-22028125)
chr4 (272-312)||(22183388-22183428)
chr4 (272-312)||(25483328-25483368)
chr4 (272-312)||(36608785-36608825)
chr4 (280-312)||(50788107-50788139)
chr4 (273-317)||(54741297-54741341)
[»] scaffold0171 (1 HSPs)
scaffold0171 (233-312)||(17582-17662)
[»] scaffold0078 (1 HSPs)
scaffold0078 (233-315)||(5309-5392)
[»] scaffold0734 (2 HSPs)
scaffold0734 (233-312)||(5729-5809)
scaffold0734 (272-312)||(5388-5428)
[»] scaffold0391 (1 HSPs)
scaffold0391 (233-312)||(3111-3191)


Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-150; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 39 - 439
Target Start/End: Complemental strand, 33809385 - 33809007
Alignment:
Q  39 gttgtgattaattggctctcctcgtgacctaacaatgatatcaaagtcgaggttcgacaaatggttcaaccgactccttgtgtcgaaagtcttcttgacc 138  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||                         
T  33809385 gttgtgattaattggctctcctcgtgacctaacagtgatatcaaagtcgaggttcgacaaatggttcaaccgactcctt--------------------- 33809307  T
Q  139 tggtgtccaggcgctgggtgttgttgtgttggaagcgacaatggtggtatgagcaattgtgtgcggatgaaagagatccaggttaaggaggagtgagcat 238  Q
     ||||||||||| |||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||  ||||||||||||||||||    
T  33809306 -ggtgtccaggcactggttgttgttgtgttggaagcggcaatggtggcatgagcaattgtgtgcggatgaaagagatacaacttaaggaggagtgagcat 33809208  T
Q  239 gatgaattgatagactcacacttcagagagaaattgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaattgcatattgaacactttatg 338  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33809207 gatgaattgatggactcacacttcagagagaaattgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaattgcatattgaacactttatg 33809108  T
Q  339 agtaagaaaactaataatctcgttgccttaaggtttttgatatggttgctttgtttggatatgaaagatctccccgggctctcctcgtgacccaacactt 438  Q
    ||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||    
T  33809107 agtaagaaaactaataaactcgttgtcttaaggttttggatatggttgctttgtttggatatgaaagatcccctcggactctcctcgtgacccaacactt 33809008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 525 - 590
Target Start/End: Complemental strand, 33808921 - 33808856
Alignment:
Q  525 ctcatttgagttggtctgatgttgttgtcttggaacctttaatttatttctctcaatatctgatgt 590  Q
    |||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||| ||||    
T  33808921 ctcatttgagttggtctgatattgttgtcttgggacctttaatttgtttctctcaatatctcatgt 33808856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 234 - 317
Target Start/End: Original strand, 2299930 - 2300013
Alignment:
Q  234 agcatgatgaattgatagactcacacttcagagagaaattgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaa 317  Q
    |||||||| ||||||| ||||||||||| || | || ||||||||||||||||||  |||||||||||||| ||||||||||||    
T  2299930 agcatgataaattgatggactcacacttgagggggatattgttgtgtgcaagtgtgggttatatgtcccacgtcagatagaaaa 2300013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 226 - 317
Target Start/End: Complemental strand, 12747963 - 12747873
Alignment:
Q  226 gaggagtgagcatgatgaattgatagactcacacttcagagagaaattgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaa 317  Q
    |||| |||||||||||||||| |  ||||||| ||| |||| || |||||||||||||||||| |||||||||||||||||| |||||||||    
T  12747963 gaggggtgagcatgatgaatttacggactcacgcttgagag-gatattgttgtgtgcaagtgtgagttatatgtcccacatcggatagaaaa 12747873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 25317450 - 25317536
Alignment:
Q  231 gtgagcatgatgaattgatagactcacacttcagagagaaattgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaa 317  Q
    ||||| ||| ||||||||||||||||||||| || || | |||||||||||||||||  |||||||||| ||| || ||||||||||    
T  25317450 gtgagtatggtgaattgatagactcacacttgagggaaacattgttgtgtgcaagtgcgagttatatgttccatattagatagaaaa 25317536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 375
Target Start/End: Complemental strand, 43346957 - 43346854
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaattgcatattgaacactttatgagtaagaaaactaataatctcgttgccttaagg 371  Q
    ||||||||| ||||||| ||||||||||||||||||||||| || | |  |  |||||||| |||| ||||||| |||  |||| ||| |||||||||||    
T  43346957 ttgttgtgtacaagtgtgagttatatgtcccacatcagataaaatagtaaaggttgaacaccttataagtaagagaacccataaactcattgccttaagg 43346858  T
Q  372 tttt 375  Q
    ||||    
T  43346857 tttt 43346854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 275 - 337
Target Start/End: Complemental strand, 39336392 - 39336330
Alignment:
Q  275 ttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaattgcatattgaacactttat 337  Q
    |||||||||||||| |||||||||||||||||| |||||||| ||| |  |||||||||||||    
T  39336392 ttgtgtgcaagtgtgagttatatgtcccacatcggatagaaagttggaggttgaacactttat 39336330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 272 - 317
Target Start/End: Complemental strand, 12114728 - 12114683
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaa 317  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||    
T  12114728 ttgttgtgtgcaagtgtaagttatatatcccacatcggatagaaaa 12114683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 244 - 312
Target Start/End: Complemental strand, 22304143 - 22304074
Alignment:
Q  244 attgatagactcacacttcagagagaaa-ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    |||||| ||||||||||| || |||||  ||||||||| ||||||| |||||||||||||||||||||||    
T  22304143 attgatggactcacacttgagggagaatgttgttgtgtacaagtgtgagttatatgtcccacatcagata 22304074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 235 - 375
Target Start/End: Complemental strand, 37990843 - 37990702
Alignment:
Q  235 gcatgatgaattgatagactcacacttcagagagaaa-ttgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaattgcatattgaacact 333  Q
    ||||||||||||||| |||||||| || || | ||   ||||||||| ||||||| |||||||||| ||||||| |||| || | |  || ||||||||     
T  37990843 gcatgatgaattgatggactcacagttgagggggagtgttgttgtgtacaagtgtgagttatatgttccacatcggataaaatagtaaatgttgaacacc 37990744  T
Q  334 ttatgagtaagaaaactaataatctcgttgccttaaggtttt 375  Q
    |||| |||||||  ||| |||| ||| |||||||||||||||    
T  37990743 ttataagtaagaggactcataaactcattgccttaaggtttt 37990702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 29645068 - 29645028
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  29645068 ttgttgtgtgcaagtgtaagttatatgtcccacatcggata 29645028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 233 - 375
Target Start/End: Complemental strand, 21832546 - 21832406
Alignment:
Q  233 gagcatgatgaattgatagactcacacttcagagagaaattgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaattgcatattgaacac 332  Q
    ||||||||||||| ||| ||||||||||| ||   ||   |||| ||||||||||| |||||||||||||||||  ||||||||| |  |  ||||||||    
T  21832546 gagcatgatgaatagatggactcacacttgaggcggag--tgttatgtgcaagtgtgagttatatgtcccacattggatagaaaagtaaaggttgaacac 21832449  T
Q  333 tttatgagtaagaaaactaataatctcgttgccttaaggtttt 375  Q
     |||| |||||||  ||| |||| ||| | |||||||||||||    
T  21832448 cttataagtaagaggactcataaactcatagccttaaggtttt 21832406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 273 - 375
Target Start/End: Complemental strand, 33175829 - 33175724
Alignment:
Q  273 tgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaattgcatattgaacactttatgagtaagaaaac---taataatctcgttgccttaa 369  Q
    |||||||| ||||||| ||||||||||| |||||||||||||||| |  |  |||||||| |||| ||||||| |||   |||||| ||| | |||||||    
T  33175829 tgttgtgtacaagtgtgagttatatgtctcacatcagatagaaaagtaaaggttgaacaccttataagtaagagaacccataataaactcatagccttaa 33175730  T
Q  370 ggtttt 375  Q
    ||||||    
T  33175729 ggtttt 33175724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 276 - 317
Target Start/End: Complemental strand, 1634477 - 1634436
Alignment:
Q  276 tgtgtgcaagtgtaagttatatgtcccacatcagatagaaaa 317  Q
    ||||||||||||| |||||||||||||||||| |||||||||    
T  1634477 tgtgtgcaagtgtgagttatatgtcccacatcggatagaaaa 1634436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 270 - 307
Target Start/End: Complemental strand, 45395821 - 45395784
Alignment:
Q  270 aattgttgtgtgcaagtgtaagttatatgtcccacatc 307  Q
    |||||||||||||||||||||||||||| |||||||||    
T  45395821 aattgttgtgtgcaagtgtaagttatatatcccacatc 45395784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 25739591 - 25739551
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    ||||||||||||||||| |||||||||||||||||| ||||    
T  25739591 ttgttgtgtgcaagtgtgagttatatgtcccacatcggata 25739551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 39914244 - 39914284
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    ||||||||||||||||| ||||||||||| |||||||||||    
T  39914244 ttgttgtgtgcaagtgtgagttatatgtctcacatcagata 39914284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 42342554 - 42342514
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    ||||||||||||||||| |||||||||||||||||| ||||    
T  42342554 ttgttgtgtgcaagtgtgagttatatgtcccacatccgata 42342514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 341
Target Start/End: Complemental strand, 54451341 - 54451273
Alignment:
Q  273 tgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaattgcatattgaacactttatgagt 341  Q
    |||||||||||  ||| ||||||||||||||||||| | |||||| || |  |||||||||||||||||    
T  54451341 tgttgtgtgcatatgtgagttatatgtcccacatcaaaaagaaaaatggaggttgaacactttatgagt 54451273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 312
Target Start/End: Original strand, 8327897 - 8327936
Alignment:
Q  273 tgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    |||||||||||||||| |||||||||||||||||| ||||    
T  8327897 tgttgtgtgcaagtgtgagttatatgtcccacatcggata 8327936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 307
Target Start/End: Original strand, 15773184 - 15773219
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatc 307  Q
    ||||||||||||||||| ||||||||||||||||||    
T  15773184 ttgttgtgtgcaagtgtgagttatatgtcccacatc 15773219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 315
Target Start/End: Complemental strand, 32463067 - 32463024
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagatagaa 315  Q
    ||||||||| ||||||| |||||||||||||||||| |||||||    
T  32463067 ttgttgtgtacaagtgtgagttatatgtcccacatcggatagaa 32463024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 314
Target Start/End: Original strand, 9240142 - 9240183
Alignment:
Q  273 tgttgtgtgcaagtgtaagttatatgtcccacatcagataga 314  Q
    |||||||||||||||| |||||||||| ||||||| ||||||    
T  9240142 tgttgtgtgcaagtgtgagttatatgttccacatcggataga 9240183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 312
Target Start/End: Complemental strand, 54017983 - 54017942
Alignment:
Q  271 attgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    |||||||||||||||||| |||||||||||| ||||| ||||    
T  54017983 attgttgtgtgcaagtgtgagttatatgtcctacatcggata 54017942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 3135627 - 3135587
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    ||||||||| ||||||| ||||||||||||||| |||||||    
T  3135627 ttgttgtgtacaagtgtgagttatatgtcccacctcagata 3135587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 380
Target Start/End: Original strand, 15772846 - 15772954
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaattgcatattgaacactttatgagtaagaaaactaataatctcgttgccttaagg 371  Q
    |||| |||||||||||| |||||||||||||| ||| |||| || | |  || |||||||| |||| |||||||  ||  |||| ||| |||| ||||||    
T  15772846 ttgtcgtgtgcaagtgtgagttatatgtcccatatcggataaaagagtaaatgttgaacaccttataagtaagaggacccataaactcattgctttaagg 15772945  T
Q  372 tttttgata 380  Q
    |||| ||||    
T  15772946 ttttggata 15772954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 25755386 - 25755426
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    ||||||||| ||||||| ||||||||||| |||||||||||    
T  25755386 ttgttgtgtacaagtgtgagttatatgtctcacatcagata 25755426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 307
Target Start/End: Complemental strand, 29644744 - 29644712
Alignment:
Q  275 ttgtgtgcaagtgtaagttatatgtcccacatc 307  Q
    |||||||||||||| ||||||||||||||||||    
T  29644744 ttgtgtgcaagtgtgagttatatgtcccacatc 29644712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 31190009 - 31190049
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    ||||||||||||||||| ||| |||||||||||||| ||||    
T  31190009 ttgttgtgtgcaagtgtgagtgatatgtcccacatcggata 31190049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 43346642 - 43346682
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    ||||||||||||||||| |||| ||||||||||||| ||||    
T  43346642 ttgttgtgtgcaagtgtgagttgtatgtcccacatcggata 43346682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 45901705 - 45901745
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    ||||||||| ||||||| |||||||||||||||||| ||||    
T  45901705 ttgttgtgtacaagtgtgagttatatgtcccacatcggata 45901745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 52634668 - 52634708
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    ||||||||| ||||||| |||||||||||||||||| ||||    
T  52634668 ttgttgtgtacaagtgtgagttatatgtcccacatcggata 52634708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 53577356 - 53577396
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    ||||||||||||||||| ||||||||||| |||||| ||||    
T  53577356 ttgttgtgtgcaagtgtgagttatatgtcacacatcggata 53577396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 226 - 376
Target Start/End: Original strand, 31509569 - 31509719
Alignment:
Q  226 gaggagtgagcatgatgaattgatagactcacacttcagagagaaattgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaattgcatat 325  Q
    |||| ||||||||||||||||||| ||||||||||| || |||| |||||||||||||||||| ||||||||||| |||||| ||||||||| || |  |    
T  31509569 gaggggtgagcatgatgaattgatggactcacacttgagggagagattgttgtgtgcaagtgtgagttatatgtctcacatcggatagaaaagtggaggt 31509668  T
Q  326 tgaacactttatgagtaagaaaactaataatctcgttgccttaaggttttt 376  Q
    ||| |||||||| ||| |||  ||| |||| ||| ||||||| ||||||||    
T  31509669 tgagcactttataagtgagaggactcataaactcattgccttgaggttttt 31509719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 234 - 317
Target Start/End: Complemental strand, 24489406 - 24489325
Alignment:
Q  234 agcatgatgaattgatagactcacacttcagagagaaattgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaa 317  Q
    |||||||||||||||| ||||||||||| || | ||   |||||||| ||||||| ||||||||||||||||||||||||||||    
T  24489406 agcatgatgaattgatggactcacacttgagggggag--tgttgtgttcaagtgtgagttatatgtcccacatcagatagaaaa 24489325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 239 - 317
Target Start/End: Complemental strand, 36522093 - 36522017
Alignment:
Q  239 gatgaattgatagactcacacttcagagagaaattgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaa 317  Q
    ||||||||||| ||||||||||| || ||||   ||||||| |||||||| ||||||||||||||||||||||||||||    
T  36522093 gatgaattgatggactcacacttgagggagag--tgttgtgcgcaagtgtgagttatatgtcccacatcagatagaaaa 36522017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 3622881 - 3622802
Alignment:
Q  58 cctcgtgacctaacaatgatatcaaagtcgaggttcgacaaatggttcaaccgactccttgtgtcgaaagtcttcttgac 137  Q
    |||| ||||| ||||||| ||||| ||| |||||||||| || ||||| |||||||||||||||| ||||| ||||||||    
T  3622881 cctcatgacccaacaatggtatcagagttgaggttcgacgaagggttcgaccgactccttgtgtcaaaagttttcttgac 3622802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 271 - 317
Target Start/End: Complemental strand, 36527250 - 36527204
Alignment:
Q  271 attgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaa 317  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||    
T  36527250 attgttgtgtacaagtgtgagttatatgtcccacatcagatagaaaa 36527204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 317
Target Start/End: Complemental strand, 36568732 - 36568688
Alignment:
Q  273 tgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaa 317  Q
    |||||||||||||||| |||||||||||||||||| |||||||||    
T  36568732 tgttgtgtgcaagtgtgagttatatgtcccacatcggatagaaaa 36568688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 41632775 - 41632819
Alignment:
Q  273 tgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaa 317  Q
    |||||||||||||||||||||||||||| |||||| |||||||||    
T  41632775 tgttgtgtgcaagtgtaagttatatgtctcacatcggatagaaaa 41632819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 282 - 345
Target Start/End: Original strand, 26074320 - 26074383
Alignment:
Q  282 caagtgtaagttatatgtcccacatcagatagaaaattgcatattgaacactttatgagtaaga 345  Q
    ||||||| |||||||||||||||||||||||||||| |  | ||||||||| |||| |||||||    
T  26074320 caagtgtgagttatatgtcccacatcagatagaaaactaaagattgaacaccttataagtaaga 26074383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 272 - 349
Target Start/End: Complemental strand, 12662818 - 12662741
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaattgcatattgaacactttatgagtaagaaaac 349  Q
    ||||||||||||||||| |||||||||||||||||| |||| || | |  |  ||||||| ||||| |||||||||||    
T  12662818 ttgttgtgtgcaagtgtgagttatatgtcccacatcggataaaatagtaaaggttgaacattttataagtaagaaaac 12662741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 317
Target Start/End: Complemental strand, 1028682 - 1028638
Alignment:
Q  273 tgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaa 317  Q
    |||||||| ||||||| |||||||||||||||||| |||||||||    
T  1028682 tgttgtgtacaagtgtgagttatatgtcccacatcggatagaaaa 1028638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 312
Target Start/End: Complemental strand, 26074988 - 26074908
Alignment:
Q  233 gagcatgatgaattgatagactcacacttcagagagaaa-ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    |||| |||||||||||| ||||||||||| || | ||   ||||||||| ||||||| |||||||||||||||||| ||||    
T  26074988 gagcttgatgaattgatggactcacacttgagggggagtgttgttgtgtacaagtgtgagttatatgtcccacatcggata 26074908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 312
Target Start/End: Complemental strand, 13415925 - 13415886
Alignment:
Q  273 tgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    |||||||||||||||| |||||||||||||||||| ||||    
T  13415925 tgttgtgtgcaagtgtgagttatatgtcccacatcggata 13415886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 307
Target Start/End: Original strand, 15370091 - 15370126
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatc 307  Q
    ||||||||||||||||| ||||||||||||||||||    
T  15370091 ttgttgtgtgcaagtgtgagttatatgtcccacatc 15370126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 375
Target Start/End: Complemental strand, 34753191 - 34753088
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaattgcatattgaacactttatgagtaagaaaactaataatctcgttgccttaagg 371  Q
    ||||||||| ||| |||||||||||||||||||||  ||||||||| |  |  |||||||| |||| |||||||| ||  |||| |   |||||||||||    
T  34753191 ttgttgtgtacaaatgtaagttatatgtcccacattggatagaaaagtaaaagttgaacaccttataagtaagaagacccataaaccgattgccttaagg 34753092  T
Q  372 tttt 375  Q
    ||||    
T  34753091 tttt 34753088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 307
Target Start/End: Original strand, 35150739 - 35150774
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatc 307  Q
    ||||||||||||||||| ||||||||||||||||||    
T  35150739 ttgttgtgtgcaagtgtgagttatatgtcccacatc 35150774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 307
Target Start/End: Original strand, 35151030 - 35151065
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatc 307  Q
    ||||||||||||||||| ||||||||||||||||||    
T  35151030 ttgttgtgtgcaagtgtgagttatatgtcccacatc 35151065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 151
Target Start/End: Complemental strand, 36527080 - 36526990
Alignment:
Q  60 tcgtgacctaacaatgatatcaaagtcgaggttcgacaaatggttcaaccgactccttgtgtcgaaagtcttcttgacctggtgtccaggcg 151  Q
    |||||||| ||||||| ||||| || |  ||||| ||||||||| | ||||||| ||| |||||||||||||| |||| |||||| ||||||    
T  36527080 tcgtgacccaacaatggtatcagagccc-ggttcaacaaatggtacgaccgacttcttatgtcgaaagtcttcctgacatggtgttcaggcg 36526990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 312
Target Start/End: Original strand, 35150002 - 35150039
Alignment:
Q  275 ttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  35150002 ttgtgtgcaagtgtgagttatatgtcccacatcggata 35150039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 299481 - 299521
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    |||||||| |||||||| |||||||||||||||||| ||||    
T  299481 ttgttgtgcgcaagtgtgagttatatgtcccacatcggata 299521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 273 - 317
Target Start/End: Complemental strand, 26074311 - 26074267
Alignment:
Q  273 tgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaa 317  Q
    |||||||||||||||| ||||||||||| |||||| |||| ||||    
T  26074311 tgttgtgtgcaagtgtgagttatatgtcacacatcggataaaaaa 26074267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 36492383 - 36492343
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    ||||||| ||||||||| |||||||||||||||||| ||||    
T  36492383 ttgttgtttgcaagtgtgagttatatgtcccacatcggata 36492343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 36630707 - 36630671
Alignment:
Q  50 ttggctctcctcgtgacctaacaatgatatcaaagtc 86  Q
    |||| |||||||||||| |||||||||||||||||||    
T  36630707 ttggatctcctcgtgacataacaatgatatcaaagtc 36630671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 40296477 - 40296441
Alignment:
Q  276 tgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  40296477 tgtgtgcaagtgtgagttatatgtcccacatcggata 40296441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 232 - 375
Target Start/End: Original strand, 30323416 - 30323559
Alignment:
Q  232 tgagcatgatgaattgatagactcacacttcagagagaaattgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaattgcatattgaaca 331  Q
    |||||||||||||||||| ||||||||||| || | || ||||||||||||||||||  ||||||||||||| |||||||||||||||| |  |||||||    
T  30323416 tgagcatgatgaattgatggactcacacttgagggggagattgttgtgtgcaagtgtgtgttatatgtcccaaatcagatagaaaattggaggttgaaca 30323515  T
Q  332 ctttatgagtaagaaaactaataatctcgttgccttaaggtttt 375  Q
    |||||  ||| |||  ||  |||| ||| |||||||||||||||    
T  30323516 ctttagaagtgagaggacctataaactcattgccttaaggtttt 30323559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 271 - 317
Target Start/End: Complemental strand, 43443149 - 43443103
Alignment:
Q  271 attgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaa 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  43443149 attgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaa 43443103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 375
Target Start/End: Complemental strand, 29873732 - 29873600
Alignment:
Q  243 aattgatagactcacacttcagagagaaattgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaattgcatattgaacactttatgagta 342  Q
    ||||||| ||||||||||| || | || ||||||||||||||| ||  |||| |||||||||||||||||||||| || |  ||||||| ||||| |||     
T  29873732 aattgatggactcacacttgagggggagattgttgtgtgcaagggtgtgttacatgtcccacatcagatagaaaagtggaggttgaacattttataagtg 29873633  T
Q  343 agaaaactaataatctcgttgccttaaggtttt 375  Q
     ||  ||| |||| ||| |||||||||||||||    
T  29873632 ggaggactcataaactcattgccttaaggtttt 29873600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 233 - 317
Target Start/End: Complemental strand, 28531517 - 28531435
Alignment:
Q  233 gagcatgatgaattgatagactcacacttcagagagaaattgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaa 317  Q
    |||||||||||| |||| ||||||||||| || | ||   |||||||||||||||| |||||||||||||||||| |||||||||    
T  28531517 gagcatgatgaactgatggactcacacttgagggggag--tgttgtgtgcaagtgtgagttatatgtcccacatcggatagaaaa 28531435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 226 - 334
Target Start/End: Original strand, 30313124 - 30313232
Alignment:
Q  226 gaggagtgagcatgatgaattgatagactcacacttcagagagaaattgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaattgcatat 325  Q
    |||| ||||||||||||||||| | ||||||||||| || |  | ||||||||||||||| ||  |||||||||| |||||| ||||||||| || |  |    
T  30313124 gaggggtgagcatgatgaattgttggactcacacttgaggggaagattgttgtgtgcaagcgtgtgttatatgtctcacatcggatagaaaagtggaggt 30313223  T
Q  326 tgaacactt 334  Q
    |||||||||    
T  30313224 tgaacactt 30313232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 273 - 317
Target Start/End: Complemental strand, 33954426 - 33954382
Alignment:
Q  273 tgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaa 317  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  33954426 tgttgtgtgcaagtgtgagttatatgtcccacatcagatagaaaa 33954382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 233 - 312
Target Start/End: Complemental strand, 36785769 - 36785689
Alignment:
Q  233 gagcatgatgaattgatagactcacacttcagagagaaa-ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    ||||||||||||||||| ||||||||||| || | ||   ||||||||||||||||| |||||||||||||||||| ||||    
T  36785769 gagcatgatgaattgatggactcacactttagggggagtgttgttgtgtgcaagtgtgagttatatgtcccacatcggata 36785689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 273 - 375
Target Start/End: Complemental strand, 33561616 - 33561514
Alignment:
Q  273 tgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaattgcatattgaacactttatgagtaagaaaactaataatctcgttgccttaaggt 372  Q
    |||||||||||||||| |||||||||| ||||||||||||||||| || |  || |||||||||| ||| |||  ||  |||| ||| ||| ||||||||    
T  33561616 tgttgtgtgcaagtgtgagttatatgttccacatcagatagaaaagtggaggttaaacactttataagtgagaggacccataaactcattgtcttaaggt 33561517  T
Q  373 ttt 375  Q
    |||    
T  33561516 ttt 33561514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 239 - 345
Target Start/End: Original strand, 40733475 - 40733582
Alignment:
Q  239 gatgaattgatagactcacacttcagagagaaat--tgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaattgcatattgaacacttta 336  Q
    ||||||||||||||||||||||| || | ||| |  | |||||| ||||||| ||||||||||||||||||||||| |||| |  || |||||||| |||    
T  40733475 gatgaattgatagactcacacttgaggg-gaagtgttattgtgtacaagtgtgagttatatgtcccacatcagataaaaaagtaaatgttgaacacctta 40733573  T
Q  337 tgagtaaga 345  Q
    | |||||||    
T  40733574 taagtaaga 40733582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 306
Target Start/End: Original strand, 3673037 - 3673111
Alignment:
Q  233 gagcatgatgaattgatagactcacacttcagagagaaat--tgttgtgtgcaagtgtaagttatatgtcccacat 306  Q
    ||||||||||||||||| ||||||||||| || ||| | |  |||||||||||||||| |||||||||||||||||    
T  3673037 gagcatgatgaattgatggactcacacttgag-gaggagtgttgttgtgtgcaagtgtgagttatatgtcccacat 3673111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 317
Target Start/End: Original strand, 7598565 - 7598646
Alignment:
Q  235 gcatgatgaattgatagactcacacttcagagagaaattgttg-tgtgcaagtgtaagttatatgtcccacatcagatagaaaa 317  Q
    ||||||||||| ||| ||||||||||| |||| ||   ||||| ||||||||||| ||||||||||||||||||||||| ||||    
T  7598565 gcatgatgaatagatggactcacacttgagagggag--tgttggtgtgcaagtgtgagttatatgtcccacatcagataaaaaa 7598646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 33561795 - 33561747
Alignment:
Q  89 ggttcgacaaatggttcaaccgactccttgtgtcgaaagtcttcttgac 137  Q
    ||||||||||| ||| ||||||||||||||| |||||||||||||||||    
T  33561795 ggttcgacaaagggtacaaccgactccttgtttcgaaagtcttcttgac 33561747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 231 - 303
Target Start/End: Original strand, 8904383 - 8904452
Alignment:
Q  231 gtgagcatgatgaattgatagactcacacttcagagagaaattgttgtgtgcaagtgtaagttatatgtccca 303  Q
    ||||||||||||||||||| ||||||||   |||||| | |||||||||||||| ||||||||| | ||||||    
T  8904383 gtgagcatgatgaattgatggactcaca---cagagatagattgttgtgtgcaattgtaagttagaagtccca 8904452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 276 - 337
Target Start/End: Complemental strand, 29874185 - 29874124
Alignment:
Q  276 tgtgtgcaagtgtaagttatatgtcccacatcagatagaaaattgcatattgaacactttat 337  Q
    ||||| |||||||  ||||||||||||||||||||||||||| || |  |||||||||||||    
T  29874185 tgtgtacaagtgtgtgttatatgtcccacatcagatagaaaagtggaggttgaacactttat 29874124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 272 - 345
Target Start/End: Complemental strand, 38796384 - 38796311
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaattgcatattgaacactttatgagtaaga 345  Q
    ||||||||||||||||| |||||||||||||||||| |||| || | |  || |||||||| |||| |||||||    
T  38796384 ttgttgtgtgcaagtgtgagttatatgtcccacatcggataaaacagtaaatgttgaacaccttataagtaaga 38796311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 233 - 317
Target Start/End: Complemental strand, 40679832 - 40679750
Alignment:
Q  233 gagcatgatgaattgatagactcacacttcagagagaaattgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaa 317  Q
    ||||||||||||| ||| ||||||||||| || | ||   |||||||||||| ||| |||||||||||||| ||| |||||||||    
T  40679832 gagcatgatgaatagatggactcacacttgagggggag--tgttgtgtgcaaatgtgagttatatgtcccatatcggatagaaaa 40679750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 962591 - 962635
Alignment:
Q  273 tgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaa 317  Q
    |||||| ||||||||| |||||||||||||||||| |||||||||    
T  962591 tgttgtatgcaagtgtgagttatatgtcccacatcggatagaaaa 962635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 6421296 - 6421336
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    ||||||||| |||||||||||||||||||||||||| ||||    
T  6421296 ttgttgtgtacaagtgtaagttatatgtcccacatcggata 6421336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 16590881 - 16590925
Alignment:
Q  273 tgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaa 317  Q
    |||||||||||||||| ||||||||||||||||||| ||| ||||    
T  16590881 tgttgtgtgcaagtgtgagttatatgtcccacatcaaataaaaaa 16590925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 31468912 - 31468872
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    ||||||||||||||||| |||||||||||||||||| ||||    
T  31468912 ttgttgtgtgcaagtgtgagttatatgtcccacatcggata 31468872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 317
Target Start/End: Complemental strand, 33953936 - 33953892
Alignment:
Q  273 tgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaa 317  Q
    |||||||||||| ||| ||||||| ||||||||||||||||||||    
T  33953936 tgttgtgtgcaaatgtgagttataagtcccacatcagatagaaaa 33953892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 38796786 - 38796746
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    ||||||||||||||||| |||||||||||||||||| ||||    
T  38796786 ttgttgtgtgcaagtgtgagttatatgtcccacatctgata 38796746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 42514642 - 42514686
Alignment:
Q  273 tgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaa 317  Q
    |||||| ||||||||| |||||||||||| |||||||||||||||    
T  42514642 tgttgtatgcaagtgtgagttatatgtcctacatcagatagaaaa 42514686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 375
Target Start/End: Complemental strand, 28254403 - 28254300
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaattgcatattgaacactttatgagtaagaaaactaataatctcgttgccttaagg 371  Q
    ||||||||||| ||||| | |||||||||||||||| ||||||||| |  |  |||||||  |||| |||||||  ||  |||| ||| |||||||||||    
T  28254403 ttgttgtgtgccagtgtgacttatatgtcccacatcggatagaaaagtaaaggttgaacatcttataagtaagaggacccataaactcattgccttaagg 28254304  T
Q  372 tttt 375  Q
    ||||    
T  28254303 tttt 28254300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 129
Target Start/End: Original strand, 30313338 - 30313415
Alignment:
Q  52 ggctctcctcgtgacctaacaatgatatcaaagtcgaggttcgacaaatggttcaaccgactccttgtgtcgaaagtc 129  Q
    |||||||||||||||| |||| || ||||| ||||| |||| ||| ||| |||| | |  ||||||||||||||||||    
T  30313338 ggctctcctcgtgacccaacagtggtatcagagtcgtggtttgacgaatagttcgatcagctccttgtgtcgaaagtc 30313415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 312
Target Start/End: Complemental strand, 35580886 - 35580849
Alignment:
Q  275 ttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  35580886 ttgtgtgcaagtgtgagttatatgtcccacatcggata 35580849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 317
Target Start/End: Complemental strand, 37895227 - 37895182
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaa 317  Q
    ||||||||||| ||| | |||||||||||||||||| |||||||||    
T  37895227 ttgttgtgtgcgagtttgagttatatgtcccacatcggatagaaaa 37895182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 380
Target Start/End: Complemental strand, 12529194 - 12529086
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaattgcatattgaacactttatgagtaagaaaactaataatctcgttgccttaagg 371  Q
    ||||||| ||||||||| |||||||||||| |||||| ||| || | |  | |||||||||  ||| |||||||  ||| |||| ||| ||||||||| |    
T  12529194 ttgttgtatgcaagtgtgagttatatgtcctacatcaaataaaacagtaaagattgaacaccgtataagtaagaggactcataaactcattgccttaaag 12529095  T
Q  372 tttttgata 380  Q
    |||| ||||    
T  12529094 ttttagata 12529086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 16542441 - 16542481
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    ||||||||||||||||| ||||||| |||||||||| ||||    
T  16542441 ttgttgtgtgcaagtgtgagttataagtcccacatcggata 16542481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 29676895 - 29676935
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    |||||||||||| |||| |||||||||||||||||| ||||    
T  29676895 ttgttgtgtgcaggtgtgagttatatgtcccacatcggata 29676935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 316
Target Start/End: Complemental strand, 36006045 - 36006001
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaa 316  Q
    ||||||||| ||||||| ||||||||||||||||||  |||||||    
T  36006045 ttgttgtgtacaagtgtgagttatatgtcccacatcgaatagaaa 36006001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 226 - 337
Target Start/End: Complemental strand, 4154492 - 4154381
Alignment:
Q  226 gaggagtgagcatgatgaattgatagactcacacttcagagagaaattgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaattgcatat 325  Q
    |||| |||||||||| |  ||||| ||||||||||| || | ||||||||||||||||| ||| |||||||||||| ||||||||||||||| || |  |    
T  4154492 gaggggtgagcatgaagttttgatggactcacacttgagggggaaattgttgtgtgcaaatgtgagttatatgtcctacatcagatagaaaagtggaggt 4154393  T
Q  326 tgaacactttat 337  Q
    ||||||||||||    
T  4154392 tgaacactttat 4154381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 233 - 317
Target Start/End: Original strand, 40518537 - 40518619
Alignment:
Q  233 gagcatgatgaattgatagactcacacttcagagagaaattgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaa 317  Q
    ||||||||||||||||| ||||||||||| || | ||   | |||||| ||||||| ||||||||||||||||||||||||||||    
T  40518537 gagcatgatgaattgatggactcacacttgagggggag--tattgtgttcaagtgtgagttatatgtcccacatcagatagaaaa 40518619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 273 - 337
Target Start/End: Complemental strand, 4154831 - 4154767
Alignment:
Q  273 tgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaattgcatattgaacactttat 337  Q
    |||||||||||||||| |||||||||||||||||| ||||||||| || |  |||||||||||||    
T  4154831 tgttgtgtgcaagtgtgagttatatgtcccacatctgatagaaaagtggaggttgaacactttat 4154767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 63 - 137
Target Start/End: Complemental strand, 4154654 - 4154580
Alignment:
Q  63 tgacctaacaatgatatcaaagtcgaggttcgacaaatggttcaaccgactccttgtgtcgaaagtcttcttgac 137  Q
    ||||| |||| || |||||||| |||| |||||| || |||||||||| |||||||| |||||||||||||||||    
T  4154654 tgacccaacagtggtatcaaagccgagtttcgacgaagggttcaaccggctccttgtatcgaaagtcttcttgac 4154580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 317
Target Start/End: Original strand, 147786 - 147866
Alignment:
Q  238 tgatgaattgatagactcacacttcagagagaaa-ttgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaa 317  Q
    |||||||||||| ||||||||||| || | ||   ||||||||||||||||| |||||||||||||||||| |||| ||||    
T  147786 tgatgaattgatggactcacacttgagggggagtgttgttgtgtgcaagtgtgagttatatgtcccacatctgataaaaaa 147866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 337
Target Start/End: Complemental strand, 20995566 - 20995502
Alignment:
Q  273 tgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaattgcatattgaacactttat 337  Q
    |||||||||||||||| ||||||||||| ||||||||||| |||| || |  |||||||||||||    
T  20995566 tgttgtgtgcaagtgtgagttatatgtctcacatcagataaaaaagtggaggttgaacactttat 20995502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 312
Target Start/End: Original strand, 30359561 - 30359641
Alignment:
Q  233 gagcatgatgaattgatagactcacacttcagagagaaa-ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    ||||||||| ||||||| ||||||||||| || | |||  ||||||||| ||||||| ||||||||||| |||||||||||    
T  30359561 gagcatgataaattgatggactcacacttgagggggaatgttgttgtgtacaagtgtgagttatatgtctcacatcagata 30359641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 41972151 - 41972195
Alignment:
Q  273 tgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaa 317  Q
    |||||||||||||||| |||||||||||||||||| |||||||||    
T  41972151 tgttgtgtgcaagtgtgagttatatgtcccacatcggatagaaaa 41972195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 280 - 375
Target Start/End: Original strand, 3669687 - 3669782
Alignment:
Q  280 tgcaagtgtaagttatatgtcccacatcagatagaaaattgcatattgaacactttatgagtaagaaaactaataatctcgttgccttaaggtttt 375  Q
    ||||||||| ||||||||||||||||||||||| || | |  |  |||||||| |||| |||||||  ||| |||| ||| |||||||||||||||    
T  3669687 tgcaagtgtgagttatatgtcccacatcagataaaatagtaaaggttgaacaccttataagtaagaggactcataaactcattgccttaaggtttt 3669782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 274 - 317
Target Start/End: Original strand, 12283867 - 12283910
Alignment:
Q  274 gttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaa 317  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||    
T  12283867 gttgtgtgcaagtgtaagttatatgtcccacgtcagataaaaaa 12283910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 313
Target Start/End: Complemental strand, 8918967 - 8918889
Alignment:
Q  236 catgatgaattgatagactcacacttcagagagaaa-ttgttgtgtgcaagtgtaagttatatgtcccacatcagatag 313  Q
    |||||||||| ||| ||||||||||| || | ||   ||||||||||||||||| ||||| ||||||||||||||||||    
T  8918967 catgatgaatagatggactcacacttgagggggagtgttgttgtgtgcaagtgtgagttacatgtcccacatcagatag 8918889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 272 - 345
Target Start/End: Original strand, 9309347 - 9309420
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaattgcatattgaacactttatgagtaaga 345  Q
    ||||||||||||||||| |||||||||||||||||| |||| || | |  || |||||||| |||| |||||||    
T  9309347 ttgttgtgtgcaagtgtgagttatatgtcccacatcggataaaagagtaaatgttgaacaccttataagtaaga 9309420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 52 - 213
Target Start/End: Complemental strand, 9620675 - 9620514
Alignment:
Q  52 ggctctcctcgtgacctaacaatgatatcaaagtcgaggttcgacaaatggttcaaccgactccttgtgtcgaaagtcttcttgacctggtgtccaggcg 151  Q
    ||||| |||||||||| ||| ||| ||||| ||| | |||||||| || ||||| | ||  |||||||||||||||||||   |||  |||||| ||| |    
T  9620675 ggctcccctcgtgacccaacgatggtatcagagttgtggttcgacgaagggttctatcggatccttgtgtcgaaagtctttcggacaaggtgtctaggag 9620576  T
Q  152 ctgggtgttgttgtgttggaagcgacaatggtggtatgagcaattgtgtgcggatgaaagag 213  Q
        ||  ||||||| ||||||||||||||| ||||  |||||  |||||||||||||||||    
T  9620575 gcatgttctgttgtggtggaagcgacaatggcggtagaagcaagagtgtgcggatgaaagag 9620514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 9608738 - 9608782
Alignment:
Q  273 tgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaa 317  Q
    |||||||||||||||| |||||||||||||| ||| |||||||||    
T  9608738 tgttgtgtgcaagtgtgagttatatgtcccatatcggatagaaaa 9608782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 317
Target Start/End: Complemental strand, 9620841 - 9620797
Alignment:
Q  273 tgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaa 317  Q
    |||||||||||||||| ||||||||||| |||| |||||||||||    
T  9620841 tgttgtgtgcaagtgtgagttatatgtctcacaacagatagaaaa 9620797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 3038456 - 3038416
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    ||||||||| ||||||| |||||||||||||||||| ||||    
T  3038456 ttgttgtgtacaagtgtgagttatatgtcccacatcggata 3038416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 233 - 281
Target Start/End: Original strand, 5897122 - 5897170
Alignment:
Q  233 gagcatgatgaattgatagactcacacttcagagagaaattgttgtgtg 281  Q
    |||||| |||||||||||||||||||||| |  |||| |||||||||||    
T  5897122 gagcataatgaattgatagactcacacttgaaggagagattgttgtgtg 5897170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 273 - 313
Target Start/End: Complemental strand, 18645752 - 18645712
Alignment:
Q  273 tgttgtgtgcaagtgtaagttatatgtcccacatcagatag 313  Q
    |||||||||||||||| ||||||||||| |||||| |||||    
T  18645752 tgttgtgtgcaagtgtgagttatatgtctcacatcggatag 18645712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 41039336 - 41039272
Alignment:
Q  69 aacaatgatatcaaagtcga-ggttcgacaaatggttcaaccgactccttgtgtcgaaagtcttc 132  Q
    ||||||||||||| | | || |||||||| || ||||||||| |||| |||||||||||||||||    
T  41039336 aacaatgatatcagaattgatggttcgacgaagggttcaaccaactctttgtgtcgaaagtcttc 41039272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 276 - 312
Target Start/End: Original strand, 45123002 - 45123038
Alignment:
Q  276 tgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  45123002 tgtgtgcaagtgtgagttatatgtcccacatcggata 45123038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 231 - 375
Target Start/End: Original strand, 8481878 - 8482021
Alignment:
Q  231 gtgagcatgatgaattgatagactcacacttcagagagaaattgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaattgcatattgaac 330  Q
    ||||| ||| ||||||||| ||||||||||| || | || |||||||||||||||||| |||||||||| |||||||||||| |||| || |  ||||||    
T  8481878 gtgagtatggtgaattgatggactcacacttgagggggagattgttgtgtgcaagtgtgagttatatgt-ccacatcagatataaaagtggaggttgaac 8481976  T
Q  331 actttatgagtaagaaaactaataatctcgttgccttaaggtttt 375  Q
    ||||||| | | |||  ||| |||| ||| |||||||||| ||||    
T  8481977 actttataaatgagatgactcataaactcattgccttaagatttt 8482021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 196 - 337
Target Start/End: Original strand, 6071051 - 6071189
Alignment:
Q  196 tgtgtgcggatgaaagagatccaggttaaggaggagtgagcatgatgaattgatagactcacacttcagagagaaattgttgtgtgcaagtgtaagttat 295  Q
    |||||||||||||||||| | | | |||||| |   |||||||||||||||||| |||||||| || || |  | |||||||||||||||||| ||||||    
T  6071051 tgtgtgcggatgaaagagcttccgtttaagggg---tgagcatgatgaattgatggactcacatttgaggggaagattgttgtgtgcaagtgtgagttat 6071147  T
Q  296 atgtcccacatcagatagaaaattgcatattgaacactttat 337  Q
    |||||||||||   |||||||| || |  |||||||||||||    
T  6071148 atgtcccacattgaatagaaaagtggaggttgaacactttat 6071189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 375
Target Start/End: Complemental strand, 10074194 - 10074054
Alignment:
Q  233 gagcatgatgaattgatagactcacacttcagagagaaattgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaattgcatattgaacac 332  Q
    ||||||||||||||||||||||| ||||| || | ||   ||||||||||||| || |||||||| ||||||||| ||||||||| |  |  ||||||||    
T  10074194 gagcatgatgaattgatagactcgcacttgagggggag--tgttgtgtgcaagggtgagttatatatcccacatcggatagaaaagtaaacgttgaacac 10074097  T
Q  333 tttatgagtaagaaaactaataatctcgttgccttaaggtttt 375  Q
     |||| |||||||  ||  |||| | | |||||||||||||||    
T  10074096 cttataagtaagaggacccataaacccattgccttaaggtttt 10074054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 270 - 337
Target Start/End: Original strand, 33605644 - 33605711
Alignment:
Q  270 aattgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaattgcatattgaacactttat 337  Q
    ||||||||||||||||||| || |||||||| |||||||||||||||| || |  |||||||||||||    
T  33605644 aattgttgtgtgcaagtgtgagctatatgtctcacatcagatagaaaagtggaggttgaacactttat 33605711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 239 - 375
Target Start/End: Complemental strand, 10074560 - 10074426
Alignment:
Q  239 gatgaattgatagactcacacttcagagagaaattgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaattgcatattgaacactttatg 338  Q
    ||||||||||| ||||||||||| || | ||   |||||||||||||||| ||||| | |||||||||| ||||||||| |  |  |||||||| ||||     
T  10074560 gatgaattgatggactcacacttaagggggag--tgttgtgtgcaagtgtgagttagaggtcccacatcggatagaaaagtaaaggttgaacaccttata 10074463  T
Q  339 agtaagaaaactaataatctcgttgccttaaggtttt 375  Q
    |||||||  ||  |||| ||| |||||||||||||||    
T  10074462 agtaagaggacccataaactcattgccttaaggtttt 10074426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 233 - 345
Target Start/End: Original strand, 16108015 - 16108128
Alignment:
Q  233 gagcatgatgaattgatagactcacacttcagagagaaa-ttgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaattgcatattgaaca 331  Q
    ||||||||||||||||| ||||||||||| || | ||   ||||||||| ||||||| |||||||||| |||||||||||| || | |  || |||||||    
T  16108015 gagcatgatgaattgatggactcacacttgagggggagtgttgttgtgtacaagtgtgagttatatgttccacatcagataaaagagtaaatgttgaaca 16108114  T
Q  332 ctttatgagtaaga 345  Q
    | |||| |||||||    
T  16108115 ccttataagtaaga 16108128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 307
Target Start/End: Complemental strand, 10073814 - 10073745
Alignment:
Q  236 catgatgaattgatagactcacacttcagagagaaattgttgtgtgcaagtgtaagttatatgtcccacatc 307  Q
    |||||||||||||| ||||||||||| |||| |    |||||||||||||||| ||||||||||||||||||    
T  10073814 catgatgaattgatggactcacacttaagaggggg--tgttgtgtgcaagtgttagttatatgtcccacatc 10073745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 276 - 337
Target Start/End: Original strand, 33605971 - 33606032
Alignment:
Q  276 tgtgtgcaagtgtaagttatatgtcccacatcagatagaaaattgcatattgaacactttat 337  Q
    ||||||||| ||||||||||||||||||||||  |||||||| || |  |||||||||||||    
T  33605971 tgtgtgcaaatgtaagttatatgtcccacatcgaatagaaaagtggaggttgaacactttat 33606032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 2580038 - 2579998
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    ||||||||||||||||| |||||||||||||||||| ||||    
T  2580038 ttgttgtgtgcaagtgtgagttatatgtcccacatcggata 2579998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 308
Target Start/End: Complemental strand, 7588390 - 7588354
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatca 308  Q
    ||||||||||||||||| |||||||||||||||||||    
T  7588390 ttgttgtgtgcaagtgtgagttatatgtcccacatca 7588354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 375
Target Start/End: Original strand, 3409259 - 3409354
Alignment:
Q  280 tgcaagtgtaagttatatgtcccacatcagatagaaaattgcatattgaacactttatgagtaagaaaactaataatctcgttgccttaaggtttt 375  Q
    ||||||||| ||||||||||||||||||||||| || | |  |  |||||||| |||| |||||||  ||  |||| ||| |||||||||||||||    
T  3409259 tgcaagtgtgagttatatgtcccacatcagataaaatagtaaaggttgaacaccttataagtaagaggacccataaactcattgccttaaggtttt 3409354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 337
Target Start/End: Complemental strand, 12071851 - 12071792
Alignment:
Q  278 tgtgcaagtgtaagttatatgtcccacatcagatagaaaattgcatattgaacactttat 337  Q
    ||||||||||| ||||||||||| | |||||||||||||| || |  |||||||||||||    
T  12071851 tgtgcaagtgtgagttatatgtctcgcatcagatagaaaaatggagtttgaacactttat 12071792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 312
Target Start/End: Complemental strand, 2579308 - 2579231
Alignment:
Q  236 catgatgaattgatagactcacacttcagagagaaa-ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    |||||||||| ||| ||||||||||| || | ||   ||||||||| ||||||| |||||||||||||||||| ||||    
T  2579308 catgatgaatagatggactcacacttgagggggagtgttgttgtgtacaagtgttagttatatgtcccacatcggata 2579231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 10911558 - 10911602
Alignment:
Q  273 tgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaa 317  Q
    |||||| ||||||||| |||||||||||| |||||||||| ||||    
T  10911558 tgttgtatgcaagtgtgagttatatgtcctacatcagataaaaaa 10911602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 16454567 - 16454607
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    ||||||||| ||||||| |||||| ||||||||||||||||    
T  16454567 ttgttgtgtacaagtgtgagttatgtgtcccacatcagata 16454607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 226 - 317
Target Start/End: Original strand, 39785 - 39875
Alignment:
Q  226 gaggagtgagcatgatgaattgatagactcacacttcagagagaaattgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaa 317  Q
    |||| |||||||||||||||||||  |||||||||| || | ||| ||||||||| ||||||| |||||||||||||||||| |||||||||    
T  39785 gaggggtgagcatgatgaattgatgaactcacacttgagggggaa-ttgttgtgttcaagtgtgagttatatgtcccacatcggatagaaaa 39875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 51 - 131
Target Start/End: Original strand, 39614 - 39694
Alignment:
Q  51 tggctctcctcgtgacctaacaatgatatcaaagtcgaggttcgacaaatggttcaaccgactccttgtgtcgaaagtctt 131  Q
    |||||| ||| |||||| |||| || ||||| || ||||||||||| || ||||| |||  ||||||||||||||||||||    
T  39614 tggctcccctagtgacccaacagtggtatcagagccgaggttcgacgaagggttcgaccatctccttgtgtcgaaagtctt 39694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 272 - 317
Target Start/End: Complemental strand, 118467 - 118422
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  118467 ttgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaa 118422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 312
Target Start/End: Original strand, 7553977 - 7554057
Alignment:
Q  233 gagcatgatgaattgatagactcacacttcagagagaaa-ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    ||||| ||||||||||| ||||||||||| || | ||   ||||||||||||||||| |||||||||||||||||| ||||    
T  7553977 gagcacgatgaattgatggactcacacttgagggggagtgttgttgtgtgcaagtgtgagttatatgtcccacatcggata 7554057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 30245486 - 30245526
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  30245486 ttgttgtgtgcaagtgtgagttatatgtcccacatcagata 30245526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 272 - 375
Target Start/End: Complemental strand, 1085782 - 1085679
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaattgcatattgaacactttatgagtaagaaaactaataatctcgttgccttaagg 371  Q
    ||||||||||||||||| |||||||||||||||||| |||| || | |  |  ||||||||||||| |||||||  ||  |||| | | |||||||||||    
T  1085782 ttgttgtgtgcaagtgtgagttatatgtcccacatcggataaaatagtaaaggttgaacactttataagtaagaggacccataaacccattgccttaagg 1085683  T
Q  372 tttt 375  Q
    ||||    
T  1085682 tttt 1085679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 233 - 312
Target Start/End: Original strand, 14681464 - 14681542
Alignment:
Q  233 gagcatgatgaattgatagactcacacttcagagagaaattgttg-tgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    ||||||||||||| ||| ||||||||||| || | ||   ||||| | |||||||||||||||||||||||||||||||||    
T  14681464 gagcatgatgaatagatggactcacacttgagggggag--tgttggtttgcaagtgtaagttatatgtcccacatcagata 14681542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 272 - 317
Target Start/End: Original strand, 45434628 - 45434673
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaa 317  Q
    ||||||||| |||||||||||||||||||||||||| |||| ||||    
T  45434628 ttgttgtgtacaagtgtaagttatatgtcccacatcggataaaaaa 45434673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 7517572 - 7517612
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    ||||||||||||||||| |||||||||||||||||| ||||    
T  7517572 ttgttgtgtgcaagtgtgagttatatgtcccacatcggata 7517612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 317
Target Start/End: Complemental strand, 8128606 - 8128562
Alignment:
Q  273 tgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaa 317  Q
    |||||||||||||||| |||||||||||||| ||| |||||||||    
T  8128606 tgttgtgtgcaagtgtgagttatatgtcccatatcggatagaaaa 8128562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 317
Target Start/End: Complemental strand, 28301708 - 28301664
Alignment:
Q  273 tgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaa 317  Q
    |||||||||||||||| ||||||||||| |||||| |||||||||    
T  28301708 tgttgtgtgcaagtgtgagttatatgtctcacatcggatagaaaa 28301664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 307
Target Start/End: Complemental strand, 40230454 - 40230422
Alignment:
Q  275 ttgtgtgcaagtgtaagttatatgtcccacatc 307  Q
    |||||||||||||||||||||||||||||||||    
T  40230454 ttgtgtgcaagtgtaagttatatgtcccacatc 40230422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 312
Target Start/End: Complemental strand, 40094559 - 40094520
Alignment:
Q  273 tgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    |||||||||||||||| |||||||||||| ||||||||||    
T  40094559 tgttgtgtgcaagtgtgagttatatgtccaacatcagata 40094520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 306
Target Start/End: Original strand, 30244693 - 30244727
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacat 306  Q
    ||||||||||||||||| |||||||||||||||||    
T  30244693 ttgttgtgtgcaagtgtgagttatatgtcccacat 30244727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 312
Target Start/End: Original strand, 36622955 - 36622992
Alignment:
Q  275 ttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  36622955 ttgtgtgcaagtgtgagttatatgtcccacatcggata 36622992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 317
Target Start/End: Original strand, 43241487 - 43241532
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaa 317  Q
    ||||||||||||||||| |||||||||| ||||||| |||| ||||    
T  43241487 ttgttgtgtgcaagtgtgagttatatgttccacatcggataaaaaa 43241532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 277 - 337
Target Start/End: Original strand, 10341829 - 10341889
Alignment:
Q  277 gtgtgcaagtgtaagttatatgtcccacatcagatagaaaattgcatattgaacactttat 337  Q
    |||||||| | ||||||||||||| |||||| ||||||||| || |  |||||||||||||    
T  10341829 gtgtgcaaatataagttatatgtctcacatcggatagaaaagtggaggttgaacactttat 10341889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 24177427 - 24177467
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    ||||||||||||||| | |||||||||||||||||| ||||    
T  24177427 ttgttgtgtgcaagtatgagttatatgtcccacatcggata 24177467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 30244262 - 30244302
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    ||||||||| ||||||| |||||||||||||||||| ||||    
T  30244262 ttgttgtgtacaagtgtgagttatatgtcccacatcggata 30244302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 30255331 - 30255371
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    |||||||||||||||||  ||||||||||||||||| ||||    
T  30255331 ttgttgtgtgcaagtgtgcgttatatgtcccacatcggata 30255371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 304
Target Start/End: Complemental strand, 36534950 - 36534918
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccac 304  Q
    ||||||||||||||||||| |||||||||||||    
T  36534950 ttgttgtgtgcaagtgtaacttatatgtcccac 36534918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 41910760 - 41910720
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    |||||||||| |||||| |||||||||||||||||| ||||    
T  41910760 ttgttgtgtgtaagtgtgagttatatgtcccacatcggata 41910720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 233 - 312
Target Start/End: Original strand, 41157327 - 41157407
Alignment:
Q  233 gagcatgatgaattgatagactcacacttcagagagaa-attgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    ||||| ||| ||||||| ||||||||||| || | ||  |||||||||||||||||| |||||||||||||||||||||||    
T  41157327 gagcacgataaattgatggactcacacttaagggggagtattgttgtgtgcaagtgtgagttatatgtcccacatcagata 41157407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 375
Target Start/End: Complemental strand, 22077698 - 22077558
Alignment:
Q  233 gagcatgatgaattgatagactcacacttcagagagaaattgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaattgcatattgaacac 332  Q
    |||||||||||||  || ||||||||||| || | ||   |||||||||||||||| ||||||||||| |||||| ||||||||| |  |  ||||||||    
T  22077698 gagcatgatgaatacatggactcacacttgagggggag--tgttgtgtgcaagtgtgagttatatgtctcacatcggatagaaaagtaaaggttgaacac 22077601  T
Q  333 tttatgagtaagaaaactaataatctcgttgccttaaggtttt 375  Q
     |||| |||||||  ||  |||| ||||| |||||||||||||    
T  22077600 cttataagtaagaggacccataaactcgtagccttaaggtttt 22077558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 233 - 318
Target Start/End: Complemental strand, 22077325 - 22077242
Alignment:
Q  233 gagcatgatgaattgatagactcacacttcagagagaaattgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaat 318  Q
    ||||||||||||| ||| ||| ||||||| || | ||   |||||||||||||||| |||||||||||||||||| ||||||||||    
T  22077325 gagcatgatgaatagatggacacacacttgagggggag--tgttgtgtgcaagtgtgagttatatgtcccacatcggatagaaaat 22077242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 273 - 375
Target Start/End: Complemental strand, 24600479 - 24600377
Alignment:
Q  273 tgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaattgcatattgaacactttatgagtaagaaaactaataatctcgttgccttaaggt 372  Q
    |||||||||||||||| |||||||||||||| ||| ||||||||| |  |  |||||||  |||| ||||||| |||| |||| ||| ||| ||||||||    
T  24600479 tgttgtgtgcaagtgtgagttatatgtcccatatcggatagaaaagtaaaggttgaacatattataagtaagagaactcataaactcattgtcttaaggt 24600380  T
Q  373 ttt 375  Q
    |||    
T  24600379 ttt 24600377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 35154205 - 35154165
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  35154205 ttgttgtgtgcaagtgtgagttatatgtcccacatcagata 35154165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 233 - 319
Target Start/End: Complemental strand, 30630841 - 30630757
Alignment:
Q  233 gagcatgatgaattgatagactcacacttcagagagaaattgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaatt 319  Q
    ||||||||||||||||| |||||||||||  |||||  | |||| ||||||||||| | ||||||||| |||||| |||| ||||||    
T  30630841 gagcatgatgaattgatggactcacactt--gagagggagtgttatgtgcaagtgtgatttatatgtctcacatcggataaaaaatt 30630757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 375
Target Start/End: Complemental strand, 1188753 - 1188651
Alignment:
Q  273 tgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaattgcatattgaacactttatgagtaagaaaactaataatctcgttgccttaaggt 372  Q
    |||||||||||||||| |||||||||| ||| ||| ||||||||| || |  ||||| | ||||| ||| |||| ||| |||| ||| |||| |||||||    
T  1188753 tgttgtgtgcaagtgtgagttatatgttccatatcggatagaaaagtggaggttgaatattttataagtgagaagactcataaactcattgctttaaggt 1188654  T
Q  373 ttt 375  Q
    |||    
T  1188653 ttt 1188651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 298
Target Start/End: Complemental strand, 47380324 - 47380258
Alignment:
Q  232 tgagcatgatgaattgatagactcacacttcagagagaaattgttgtgtgcaagtgtaagttatatg 298  Q
    |||||||||||||||||| || |||||||| || |  | |||||||||||||||||| |||||||||    
T  47380324 tgagcatgatgaattgatggattcacacttgaggggaagattgttgtgtgcaagtgtgagttatatg 47380258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 317
Target Start/End: Complemental strand, 19283620 - 19283576
Alignment:
Q  273 tgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaa 317  Q
    |||||||||||||||| |||||||||||||||| | |||||||||    
T  19283620 tgttgtgtgcaagtgtgagttatatgtcccacaccggatagaaaa 19283576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 317
Target Start/End: Original strand, 22793267 - 22793315
Alignment:
Q  269 aaattgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaa 317  Q
    ||||||||||| |||||||| ||||||||||||||||||  ||||||||    
T  22793267 aaattgttgtgagcaagtgtgagttatatgtcccacatcgtatagaaaa 22793315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 44685449 - 44685493
Alignment:
Q  273 tgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaa 317  Q
    |||||||||||||||| |||||||||||||| ||| |||||||||    
T  44685449 tgttgtgtgcaagtgtgagttatatgtcccatatcggatagaaaa 44685493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 375
Target Start/End: Original strand, 17294569 - 17294672
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaattgcatattgaacactttatgagtaagaaaactaataatctcgttgccttaagg 371  Q
    ||||||||| ||||||| |||||||||||||||||| |||| || | |  |  ||||||||||||| |||||||  ||  |||| | | |||||||||||    
T  17294569 ttgttgtgtacaagtgtgagttatatgtcccacatcggataaaagagtaaaggttgaacactttataagtaagaggacccataaacccattgccttaagg 17294668  T
Q  372 tttt 375  Q
    ||||    
T  17294669 tttt 17294672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 315
Target Start/End: Complemental strand, 21378207 - 21378164
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagatagaa 315  Q
    ||||||||||||||||| |||||||||||||| ||| |||||||    
T  21378207 ttgttgtgtgcaagtgtcagttatatgtcccagatcggatagaa 21378164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 307
Target Start/End: Complemental strand, 37850766 - 37850731
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatc 307  Q
    ||||||||||||||||| ||||||||||||||||||    
T  37850766 ttgttgtgtgcaagtgtgagttatatgtcccacatc 37850731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 312
Target Start/End: Complemental strand, 50469246 - 50469207
Alignment:
Q  273 tgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    |||||||||||||||| |||||||||||| ||||||||||    
T  50469246 tgttgtgtgcaagtgtgagttatatgtcctacatcagata 50469207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 374
Target Start/End: Complemental strand, 41184591 - 41184489
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaattgcatattgaacactttatgagtaagaaaactaataatctcgttgccttaagg 371  Q
    ||||||||||||||||| ||||||||||| |||||| |||| || | |  |  ||||||||||||| |||||||  ||  |||| | | |||||||||||    
T  41184591 ttgttgtgtgcaagtgtgagttatatgtctcacatcggataaaatagtaaaggttgaacactttataagtaagaggacccataaacccattgccttaagg 41184492  T
Q  372 ttt 374  Q
    |||    
T  41184491 ttt 41184489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 318
Target Start/End: Original strand, 45839619 - 45839665
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaat 318  Q
    ||||||||| ||||| | |||||||||||||||||| ||||||||||    
T  45839619 ttgttgtgtacaagtatgagttatatgtcccacatcggatagaaaat 45839665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 317
Target Start/End: Complemental strand, 66638 - 66593
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaa 317  Q
    ||||||||||||||||| |||||||||| ||| ||| |||||||||    
T  66638 ttgttgtgtgcaagtgtgagttatatgttccatatcggatagaaaa 66593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 317
Target Start/End: Original strand, 9955899 - 9955944
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaa 317  Q
    ||||||||||  ||||| ||||||||||||||||||||||| ||||    
T  9955899 ttgttgtgtgttagtgtgagttatatgtcccacatcagataaaaaa 9955944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 317
Target Start/End: Complemental strand, 39066366 - 39066321
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaa 317  Q
    ||||||||||||||||| |||||||| | ||||||| |||||||||    
T  39066366 ttgttgtgtgcaagtgtgagttatatattccacatcggatagaaaa 39066321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 34364499 - 34364539
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    ||||||||||||||||| ||||||||||| |||||| ||||    
T  34364499 ttgttgtgtgcaagtgtgagttatatgtctcacatcggata 34364539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 34364917 - 34364957
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    ||||||||||||||||| ||||||||||| |||||| ||||    
T  34364917 ttgttgtgtgcaagtgtgagttatatgtcacacatcggata 34364957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 37556103 - 37556143
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    ||||||||| ||||||| |||||||||||||||||| ||||    
T  37556103 ttgttgtgtacaagtgtgagttatatgtcccacatcggata 37556143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 41142364 - 41142404
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    ||||| ||||||||||| |||||||||||||||||| ||||    
T  41142364 ttgttctgtgcaagtgtgagttatatgtcccacatcggata 41142404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 315
Target Start/End: Original strand, 2741026 - 2741106
Alignment:
Q  233 gagcatgatgaattgatagactcacacttcagagagaaattgttgtgtgcaagtgtaagttatatgtcccacatcagatagaa 315  Q
    ||||||||||||||||| ||||||||||| |  | ||   |||| ||||||||||| ||||||||||||||||||||||||||    
T  2741026 gagcatgatgaattgatggactcacacttgaaggggag--tgttatgtgcaagtgtgagttatatgtcccacatcagatagaa 2741106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 375
Target Start/End: Original strand, 36629192 - 36629332
Alignment:
Q  233 gagcatgatgaattgatagactcacacttcagagagaaattgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaattgcatattgaacac 332  Q
    ||||||||||||||||| | ||||||||| || | ||   |||||||| ||||||| |||||||||||||||||| ||||||||| |  |  || |||||    
T  36629192 gagcatgatgaattgatgggctcacacttgagggggag--tgttgtgttcaagtgtgagttatatgtcccacatcggatagaaaagtaaaagttaaacac 36629289  T
Q  333 tttatgagtaagaaaactaataatctcgttgccttaaggtttt 375  Q
     |||| |||||||  ||  |||| ||| |||||||||||||||    
T  36629290 cttataagtaagaggacccataaactcattgccttaaggtttt 36629332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 317
Target Start/End: Complemental strand, 39793023 - 39792979
Alignment:
Q  273 tgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaa 317  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||    
T  39793023 tgttgtgtacaagtgtgagttatatgtcccacatcagatagaaaa 39792979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 272 - 375
Target Start/End: Complemental strand, 34646813 - 34646710
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaattgcatattgaacactttatgagtaagaaaactaataatctcgttgccttaagg 371  Q
    ||||||||| ||||||| |||||||||||||||||| |||| || | |  || |||||||| |||| | |||||  ||| |||| ||| |||||||||||    
T  34646813 ttgttgtgtacaagtgtgagttatatgtcccacatcggataaaacagtaaatgttgaacaccttataactaagaggactcataaactcattgccttaagg 34646714  T
Q  372 tttt 375  Q
    ||||    
T  34646713 tttt 34646710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 315
Target Start/End: Original strand, 2740693 - 2740735
Alignment:
Q  273 tgttgtgtgcaagtgtaagttatatgtcccacatcagatagaa 315  Q
    |||||||||||||||| |||||||||||||||||| |||||||    
T  2740693 tgttgtgtgcaagtgtgagttatatgtcccacatcggatagaa 2740735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 317
Target Start/End: Complemental strand, 3244649 - 3244570
Alignment:
Q  236 catgatgaattgatagactcacacttcagagagaaattgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaa 317  Q
    |||||||||| ||| ||||||| ||| || ||||   |||||||||||||||| ||||||||||| |||||| |||||||||    
T  3244649 catgatgaatagatggactcacgcttaagggagag--tgttgtgtgcaagtgtgagttatatgtctcacatcggatagaaaa 3244570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 375
Target Start/End: Original strand, 28034222 - 28034324
Alignment:
Q  273 tgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaattgcatattgaacactttatgagtaagaaaactaataatctcgttgccttaaggt 372  Q
    |||||||||||||||| | ||||||||||| |||| ||||||||| || |  ||||||||||||| ||| ||| |||  |||| ||  |||| |||||||    
T  28034222 tgttgtgtgcaagtgtgaattatatgtcccgcatcggatagaaaagtggaggttgaacactttataagtgagagaacccataaacttattgctttaaggt 28034321  T
Q  373 ttt 375  Q
    |||    
T  28034322 ttt 28034324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 272 - 317
Target Start/End: Original strand, 12197370 - 12197415
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaa 317  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||||||    
T  12197370 ttgttgtgtgcaagtgtgagttataggtcccacatcaaatagaaaa 12197415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 1731811 - 1731771
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    ||||||||||||| ||| |||||||||||||||||||||||    
T  1731811 ttgttgtgtgcaaatgtgagttatatgtcccacatcagata 1731771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 39404390 - 39404430
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    ||||||||| ||||||| |||||||||||||||||||||||    
T  39404390 ttgttgtgtacaagtgtgagttatatgtcccacatcagata 39404430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 52884879 - 52884919
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    ||||||||||||||||| |||||||||||||||||| ||||    
T  52884879 ttgttgtgtgcaagtgtgagttatatgtcccacatcggata 52884919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 312
Target Start/End: Original strand, 52884688 - 52884727
Alignment:
Q  273 tgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    |||||||||||||||| |||||||||||||||||| ||||    
T  52884688 tgttgtgtgcaagtgtgagttatatgtcccacatcggata 52884727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 306
Target Start/End: Original strand, 3341120 - 3341154
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacat 306  Q
    ||||||||||||||||| |||||||||||||||||    
T  3341120 ttgttgtgtgcaagtgtgagttatatgtcccacat 3341154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 317
Target Start/End: Complemental strand, 16888981 - 16888935
Alignment:
Q  272 ttgttgtgtg-caagtgtaagttatatgtcccacatcagatagaaaa 317  Q
    |||||||||| ||||||| |||||||||||||||||| |||||||||    
T  16888981 ttgttgtgtggcaagtgtgagttatatgtcccacatcggatagaaaa 16888935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 312
Target Start/End: Original strand, 3700356 - 3700397
Alignment:
Q  271 attgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    |||||||||||||||||| |||||||||||| ||||| ||||    
T  3700356 attgttgtgtgcaagtgtgagttatatgtcctacatcggata 3700397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 312
Target Start/End: Complemental strand, 41707629 - 41707588
Alignment:
Q  271 attgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    |||||||||| ||||||| |||||||||||||||||| ||||    
T  41707629 attgttgtgtacaagtgtgagttatatgtcccacatcggata 41707588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 307
Target Start/End: Original strand, 44620654 - 44620687
Alignment:
Q  274 gttgtgtgcaagtgtaagttatatgtcccacatc 307  Q
    ||||||||||||||| ||||||||||||||||||    
T  44620654 gttgtgtgcaagtgtgagttatatgtcccacatc 44620687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 308
Target Start/End: Original strand, 45050592 - 45050629
Alignment:
Q  271 attgttgtgtgcaagtgtaagttatatgtcccacatca 308  Q
    |||||||||||||||||| ||||||||||| |||||||    
T  45050592 attgttgtgtgcaagtgtgagttatatgtctcacatca 45050629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 3340802 - 3340838
Alignment:
Q  275 ttgtgtgcaagtgtaagttatatgtcccacatcagat 311  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  3340802 ttgtgtgcaagtgtgagttatatgtcccgcatcagat 3340838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 4390265 - 4390225
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    ||||||||||||||||| ||||| || ||||||||||||||    
T  4390265 ttgttgtgtgcaagtgtgagttacatatcccacatcagata 4390225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 10245912 - 10245952
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    ||||||||||||||||| ||||||||| |||||||| ||||    
T  10245912 ttgttgtgtgcaagtgtgagttatatgccccacatcggata 10245952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 22028125 - 22028085
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    ||||||||||||||||| | |||||||||||||||| ||||    
T  22028125 ttgttgtgtgcaagtgtgacttatatgtcccacatcggata 22028085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 22183428 - 22183388
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    ||||||||||||||||| |||||||| ||||||||| ||||    
T  22183428 ttgttgtgtgcaagtgtgagttatatatcccacatcggata 22183388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 25483328 - 25483368
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    ||||||||||||||||| ||||||||||| |||||| ||||    
T  25483328 ttgttgtgtgcaagtgtgagttatatgtctcacatcggata 25483368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 36608825 - 36608785
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    ||||||||||||||||| |||||||||||| ||||| ||||    
T  36608825 ttgttgtgtgcaagtgtgagttatatgtccaacatcggata 36608785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 280 - 312
Target Start/End: Complemental strand, 50788139 - 50788107
Alignment:
Q  280 tgcaagtgtaagttatatgtcccacatcagata 312  Q
    |||||||||||||||||||||||||||| ||||    
T  50788139 tgcaagtgtaagttatatgtcccacatcggata 50788107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 273 - 317
Target Start/End: Complemental strand, 54741341 - 54741297
Alignment:
Q  273 tgttgtgtgcaagtgtaagttatatgtcccacatcagatagaaaa 317  Q
    |||||||||||||||| | ||||||||| |||||| |||||||||    
T  54741341 tgttgtgtgcaagtgtgaattatatgtctcacatcggatagaaaa 54741297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 312
Target Start/End: Complemental strand, 17662 - 17582
Alignment:
Q  233 gagcatgatgaattgatagactcacacttcagagagaaa-ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    ||||||||||||| ||| ||||||||||| || | ||   ||||||||||||||||| ||||||||||| |||||||||||    
T  17662 gagcatgatgaatagatggactcacacttgagggggagtgttgttgtgtgcaagtgtgagttatatgtcacacatcagata 17582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 233 - 315
Target Start/End: Original strand, 5309 - 5392
Alignment:
Q  233 gagcatgatgaattgatagactcacacttcagagagaaatt-gttgtgtgcaagtgtaagttatatgtcccacatcagatagaa 315  Q
    ||||| |||||| |||| ||||||||||| || ||||  || ||||||||||||||| |||||||||| ||||||| |||||||    
T  5309 gagcacgatgaactgatggactcacacttgagggagagttttgttgtgtgcaagtgtgagttatatgttccacatcggatagaa 5392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0734 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0734
Description:

Target: scaffold0734; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 312
Target Start/End: Original strand, 5729 - 5809
Alignment:
Q  233 gagcatgatgaattgatagactcacacttcagagagaaa-ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    ||||| ||||||||||| ||||||||||| || | ||   ||||||||||||||||| ||||||||||| |||||| ||||    
T  5729 gagcaagatgaattgatggactcacacttgagggggagtgttgttgtgtgcaagtgtgagttatatgtcgcacatcggata 5809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0734; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 5388 - 5428
Alignment:
Q  272 ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    ||||||||||||||||| |||||||||||| ||||| ||||    
T  5388 ttgttgtgtgcaagtgtgagttatatgtcctacatcggata 5428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 312
Target Start/End: Complemental strand, 3191 - 3111
Alignment:
Q  233 gagcatgatgaattgatagactcacacttcagagagaaa-ttgttgtgtgcaagtgtaagttatatgtcccacatcagata 312  Q
    ||||||||||| ||||| ||||||||||| || | ||   |||||||||||| |||| |||||||||||||||||| ||||    
T  3191 gagcatgatgagttgatggactcacacttgagggggagtgttgttgtgtgcaggtgtgagttatatgtcccacatcggata 3111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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