View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9401_low_80 (Length: 307)
Name: NF9401_low_80
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9401_low_80 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 44840992 - 44840918
Alignment:
| Q |
1 |
catgcttttttccttctctgctcataaaatgaaagnnnnnnntaataatagttagaaaacaagaaatgaaatgag |
75 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
44840992 |
catgcttttttctttctctgcttataaaatgaaagaaaaaaataataatagttagaaaacaagaaatgaaatgag |
44840918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 44840736 - 44840701
Alignment:
| Q |
257 |
gtgttctgtctgagttcgtaaccaagtgttgattat |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
44840736 |
gtgttctgtctgagttcgtaaccaagtgttgattat |
44840701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 208
Target Start/End: Complemental strand, 44840820 - 44840785
Alignment:
| Q |
173 |
aacggttgtgatgaagcagtgtaaaaagtgaactag |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
44840820 |
aacggttgtgatgaagcagtgtaaaaagtgaactag |
44840785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University