View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9401_low_88 (Length: 272)
Name: NF9401_low_88
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9401_low_88 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 51844841 - 51845101
Alignment:
| Q |
1 |
acgttaagaaccattagttttgttaacaactctttctctggtgcaattcctgaattcaacaaacttggtgctcttaaagctctttatttatcattaaacc |
100 |
Q |
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| T |
51844841 |
acgttaagaaccattagttttgttaacaactctttctctggtgcaattcctgaattcaacaaacttggtgctcttaaagctctttatttatcattaaacc |
51844940 |
T |
|
| Q |
101 |
aattctcaggacctattcctccagattttttctctcatttaggttctctcaagaaagtatggctcaacaataataaattctcaggaaatataccagactc |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51844941 |
aattctcaggacctattcctccagattttttttctcatttaggttctctcaagaaagtatggctcaacaataataaattctcaggaaatataccagactc |
51845040 |
T |
|
| Q |
201 |
attaacaaatcttcgtttcctcggtgagttacatctcgataacaatgagttctctgctcct |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
51845041 |
attaacaaatcttcgtttcctcggtgagttacatctcgataacaatgagttctctggtcct |
51845101 |
T |
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