View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9401_low_97 (Length: 248)
Name: NF9401_low_97
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9401_low_97 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 25 - 231
Target Start/End: Complemental strand, 4106689 - 4106483
Alignment:
| Q |
25 |
agaataaggctgcatccgttcataatctgataatggccaattcacatttgtaagaacagtaaactcatacaaatcttctggcttcacattcaatccttca |
124 |
Q |
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| T |
4106689 |
agaataaggctgcatccgttcataatctgataatggccaattcacatttgtaagaacagtaaactcatacaaatcttctggcttcacattcaatccttca |
4106590 |
T |
|
| Q |
125 |
ccattatcagctccacaaccaagtgtgaaattgagttgacacccgccaaattgattacttggatctatcaacgaataaccataaggacatttacaagtag |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4106589 |
ccattatcagctccacaaccaagtgtgaaattgagttgacacccgccaaattgattacttggatctatcaacgaataaccataaggacatttacaagtag |
4106490 |
T |
|
| Q |
225 |
gtctctg |
231 |
Q |
| |
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||||||| |
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| T |
4106489 |
gtctctg |
4106483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 25 - 231
Target Start/End: Complemental strand, 4129876 - 4129670
Alignment:
| Q |
25 |
agaataaggctgcatccgttcataatctgataatggccaattcacatttgtaagaacagtaaactcatacaaatcttctggcttcacattcaatccttca |
124 |
Q |
| |
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||||||||| |||||| ||||||||||||||| ||||||| ||||| | ||||||||||||||||||| || |||||||||||||||||||| |||||| |
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| T |
4129876 |
agaataaggttgcatcttttcataatctgataaaggccaatccacatctctaagaacagtaaactcatataactcttctggcttcacattcaacccttca |
4129777 |
T |
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| Q |
125 |
ccattatcagctccacaaccaagtgtgaaattgagttgacacccgccaaattgattacttggatctatcaacgaataaccataaggacatttacaagtag |
224 |
Q |
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||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4129776 |
ccattattatctccacaaccaagtgtgaaattgagttgacacccgccaaattgattacttggatctatcaacgaataaccataaggacatttacaagtag |
4129677 |
T |
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| Q |
225 |
gtctctg |
231 |
Q |
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||||||| |
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| T |
4129676 |
gtctctg |
4129670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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