View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9401_low_99 (Length: 246)
Name: NF9401_low_99
Description: NF9401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9401_low_99 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 37673047 - 37673284
Alignment:
| Q |
1 |
cgtcctttgggtcttcagtcatcttccttaaaacggacttgacagagacattagaaccaatgctcaagaatggaggttgtactatcccctcagatttagc |
100 |
Q |
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| T |
37673047 |
cgtcctttgggtcttcagtcatcttccttaaaacggacttgacagagacattagaaccaacgctagagaatggaggttgcactatcccctcagatttagc |
37673146 |
T |
|
| Q |
101 |
aatgttgttagcaatacaagtgactggttttttctcattcatgtctttcctactctccacaaaagtataataattttttgagcggagagtcatacttgta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
37673147 |
aatgttgttagcaatacaagtgactggttttttctcattcatgtctttcctactctccacaaaagtataataattttttgagtggagagtcatacttgta |
37673246 |
T |
|
| Q |
201 |
tcatgttttccagaacatgtttttgtattgatgtccat |
238 |
Q |
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||||||||||||||||||||||||||||||||| |||| |
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| T |
37673247 |
tcatgttttccagaacatgtttttgtattgatgaccat |
37673284 |
T |
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