View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9402_low_10 (Length: 221)

Name: NF9402_low_10
Description: NF9402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9402_low_10
NF9402_low_10
[»] chr8 (13 HSPs)
chr8 (19-191)||(36200314-36200487)
chr8 (21-170)||(36209550-36209699)
chr8 (20-170)||(36188106-36188259)
chr8 (19-170)||(36196427-36196577)
chr8 (30-174)||(36184162-36184305)
chr8 (178-218)||(36188444-36188484)
chr8 (178-218)||(36196762-36196802)
chr8 (114-174)||(36212010-36212070)
chr8 (133-174)||(36214305-36214346)
chr8 (116-174)||(36190574-36190632)
chr8 (116-174)||(36197997-36198055)
chr8 (128-170)||(36201811-36201853)
chr8 (178-218)||(36209885-36209925)


Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 36200487 - 36200314
Alignment:
Q  19 aggaattcactttcctctttgacaaaatagtttgaactcggtttggtatggttagttctgttaacaagtcgttgtttgctaaatgatgtaatatattgta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36200487 aggaattcactttcctctttgacaaaatagtttgaactcggtttggtatggttagttctgttaacaagtcgttgtttgctaaatgatgtaatatattgta 36200388  T
Q  119 gctgttttgttttcaaagtttca-tttagaattttggatattaatttggagtgtaagattatgtgcatgtttgg 191  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  36200387 gctgttttgttttcaaagtttcattttagaattttggatattaatttggagtgtaagattatgtgtatgtttgg 36200314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 21 - 170
Target Start/End: Complemental strand, 36209699 - 36209550
Alignment:
Q  21 gaattcactttcctctttgacaaaatagtttgaactcggtttggtatggttagttctgttaacaagtcgttgtttgctaaatgatgtaatatattgtagc 120  Q
    |||||||| ||||||| | | || || |||||||||  ||||||||||||| |||||||||||||||| |||||||||||||  | ||| ||||||||||    
T  36209699 gaattcaccttcctctctaataagatggtttgaactatgtttggtatggttggttctgttaacaagtcattgtttgctaaatagtataacatattgtagc 36209600  T
Q  121 tgttttgttttcaaagtttcatttagaattttggatattaatttggagtg 170  Q
    |||||| |||||||||||| ||||||| ||||| ||||||| ||||||||    
T  36209599 tgttttattttcaaagtttaatttagatttttgaatattaacttggagtg 36209550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 170
Target Start/End: Complemental strand, 36188259 - 36188106
Alignment:
Q  20 ggaattcactttcctctttgacaaaatagtttgaactcggtttggtatggttagttctgtt---aacaagtcgttgtttgctaaatgatgtaatatattg 116  Q
    ||||||||| ||||||| | | ||||| ||||||||| |||||||||||||| ||||||||   |||||||| | |||||||||||  | ||| ||||||    
T  36188259 ggaattcaccttcctctctaataaaatggtttgaactaggtttggtatggtttgttctgttgttaacaagtcatggtttgctaaatagtataacatattg 36188160  T
Q  117 tagctgttttgttttcaaagtttcatttagaattttggatattaatttggagtg 170  Q
    || ||||||  |||||||||||| ||||||||||||| ||||||| ||||||||    
T  36188159 taactgtttaattttcaaagtttaatttagaattttgaatattaacttggagtg 36188106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 36196577 - 36196427
Alignment:
Q  19 aggaattcactttcctctttgacaaaatagtttgaactcggtttggtatggttagttctgttaacaagtcgttgtttgctaaatgatgtaatatattgta 118  Q
    |||||||||||||| ||||||| ||||| |||||||||  |||||| ||||||  |||||||||||||||  | ||||||||||  | ||  ||||||||    
T  36196577 aggaattcactttcttctttgataaaatggtttgaactatgtttggaatggttgcttctgttaacaagtcact-tttgctaaatagtatagcatattgta 36196479  T
Q  119 gctgttttgttttcaaagtttcatttagaattttggatattaatttggagtg 170  Q
    |||||||| |||||||| ||| ||||||| ||||  ||||||| ||||||||    
T  36196478 gctgttttattttcaaattttaatttagattttttaatattaacttggagtg 36196427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 30 - 174
Target Start/End: Complemental strand, 36184305 - 36184162
Alignment:
Q  30 ttcctctttgacaaaatagtttgaactcggtttggtatggttagttctgttaacaagtcgttgtttgctaaatgatgtaatatattgtagctgttttgtt 129  Q
    |||||||| || ||||| |||||||||  ||||||||||||| |||||||||||| |||  | ||||||||||  | ||| |||||||| ||||||| ||    
T  36184305 ttcctcttcgataaaatggtttgaactatgtttggtatggttggttctgttaacatgtcact-tttgctaaatagtataacatattgtaactgttttatt 36184207  T
Q  130 ttcaaagtttcatttagaattttggatattaatttggagtgtaag 174  Q
    |||||||||   |||||||||||| | ||||| || |||||||||    
T  36184206 ttcaaagttaagtttagaattttgaaaattaactttgagtgtaag 36184162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 36188444 - 36188484
Alignment:
Q  178 atgtgcatgtttggacttatgattttcatcatctctgctac 218  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  36188444 atgtgcatgtttggacttatgattttcatcatctctgctac 36188484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 36196762 - 36196802
Alignment:
Q  178 atgtgcatgtttggacttatgattttcatcatctctgctac 218  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  36196762 atgtgcatgtttggacttatgattttcatcatctctgctac 36196802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 36212070 - 36212010
Alignment:
Q  114 ttgtagctgttttgttttcaaagtttcatttagaattttggatattaatttggagtgtaag 174  Q
    |||||| |||||| |||||||||||| ||||||||||||||||||| || | |||||||||    
T  36212070 ttgtagttgttttattttcaaagtttaatttagaattttggatattgatctagagtgtaag 36212010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 36214346 - 36214305
Alignment:
Q  133 aaagtttcatttagaattttggatattaatttggagtgtaag 174  Q
    ||||||||||||||||||||||||| | ||||||||||||||    
T  36214346 aaagtttcatttagaattttggatactgatttggagtgtaag 36214305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 174
Target Start/End: Complemental strand, 36190632 - 36190574
Alignment:
Q  116 gtagctgttttgttttcaaagtttcatttagaattttggatattaatttggagtgtaag 174  Q
    |||| |||||| |||||||||||| ||||| ||||||||||||| || | |||||||||    
T  36190632 gtagttgttttattttcaaagtttaatttaaaattttggatattgatctagagtgtaag 36190574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 174
Target Start/End: Complemental strand, 36198055 - 36197997
Alignment:
Q  116 gtagctgttttgttttcaaagtttcatttagaattttggatattaatttggagtgtaag 174  Q
    |||| |||||| |||||||||||||||||| || |||||||||| || |||||| ||||    
T  36198055 gtagttgttttattttcaaagtttcatttataaatttggatattgatctggagtttaag 36197997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 36201853 - 36201811
Alignment:
Q  128 ttttcaaagtttcatttagaattttggatattaatttggagtg 170  Q
    |||||||||||||||||||||||||||||| | |||| |||||    
T  36201853 ttttcaaagtttcatttagaattttggataatgattttgagtg 36201811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 36209885 - 36209925
Alignment:
Q  178 atgtgcatgtttggacttatgattttcatcatctctgctac 218  Q
    |||||||||||| |||||  |||||||||||||||||||||    
T  36209885 atgtgcatgtttcgacttcagattttcatcatctctgctac 36209925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University