View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9402_low_3 (Length: 348)

Name: NF9402_low_3
Description: NF9402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9402_low_3
NF9402_low_3
[»] chr1 (9 HSPs)
chr1 (8-334)||(39299175-39299499)
chr1 (100-159)||(10781363-10781422)
chr1 (200-318)||(39306976-39307088)
chr1 (110-164)||(41006125-41006179)
chr1 (101-165)||(9539761-9539825)
chr1 (101-150)||(27464376-27464425)
chr1 (102-138)||(281155-281191)
chr1 (102-138)||(9516774-9516810)
chr1 (102-138)||(23347807-23347843)
[»] chr3 (8 HSPs)
chr3 (102-164)||(24309801-24309863)
chr3 (109-159)||(8034693-8034743)
chr3 (102-139)||(7856447-7856484)
chr3 (125-165)||(7729032-7729072)
chr3 (115-167)||(38572544-38572596)
chr3 (102-143)||(19832045-19832086)
chr3 (106-158)||(25032224-25032276)
chr3 (102-138)||(35504224-35504260)
[»] chr8 (5 HSPs)
chr8 (102-165)||(44873209-44873272)
chr8 (109-156)||(18075735-18075782)
chr8 (102-144)||(10381366-10381408)
chr8 (109-171)||(11995263-11995325)
chr8 (116-165)||(34697094-34697143)
[»] chr4 (6 HSPs)
chr4 (102-165)||(36247751-36247814)
chr4 (102-159)||(4377166-4377223)
chr4 (102-165)||(2813913-2813976)
chr4 (106-148)||(21161520-21161562)
chr4 (103-150)||(1758208-1758255)
chr4 (102-158)||(33517960-33518016)
[»] chr5 (5 HSPs)
chr5 (102-167)||(36744858-36744924)
chr5 (109-167)||(26459614-26459672)
chr5 (102-147)||(34751196-34751241)
chr5 (109-164)||(7607396-7607451)
chr5 (102-138)||(33824853-33824889)
[»] chr2 (6 HSPs)
chr2 (109-159)||(6141393-6141443)
chr2 (112-173)||(40372649-40372710)
chr2 (102-138)||(18703766-18703802)
chr2 (109-156)||(2081774-2081821)
chr2 (111-165)||(11562089-11562143)
chr2 (109-165)||(18458704-18458760)
[»] chr6 (5 HSPs)
chr6 (109-163)||(17848978-17849032)
chr6 (109-165)||(14607866-14607922)
chr6 (102-138)||(16461748-16461784)
chr6 (102-137)||(6689160-6689195)
chr6 (114-167)||(35187961-35188014)
[»] chr7 (6 HSPs)
chr7 (113-170)||(1691534-1691591)
chr7 (102-138)||(7899435-7899471)
chr7 (109-157)||(10702673-10702721)
chr7 (109-165)||(10703221-10703277)
chr7 (102-138)||(26050115-26050151)
chr7 (102-138)||(26059474-26059510)


Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 8 - 334
Target Start/End: Original strand, 39299175 - 39299499
Alignment:
Q  8 tagcaaagggggtacaaataaataaattcatgaatttatttgctccatctatgcacaacccattccttgcaagttgcagggaataattcaaagaaatata 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39299175 tagcaaagggggtacaaataaataaattcatgaatttatttgctccatctatgcacaacccattccttgcaagttgcagggaataattcaaagaaatata 39299274  T
Q  108 atttgcattattgtttctttgaaattttagcttcacatgtacctaaagtctgaatccgtctctgatataatctataatatgatctcatggtatttttatg 207  Q
     ||||||||||||||| ||| |||||||| || ||||||||||||||||||  || || | |||  ||   ||||||||||||||||| || ||| ||||    
T  39299275 gtttgcattattgtttttttaaaattttaactccacatgtacctaaagtctagattcgaccctg--atgccctataatatgatctcatagtgtttctatg 39299372  T
Q  208 atgggattttgaatataaccaaaaatcacgatgaacattaaaagatgttgaaaatctacatttttagatgtagtagagaagtttaataatgggaatataa 307  Q
    ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39299373 atgagattttgaatatagccaaaaatcacgatgaacattaaaagatgttgaaaatctacatttttagatgtagtagagaagtttaataatgggaatataa 39299472  T
Q  308 gataatatttgggtaccaccaaaataa 334  Q
     |||||||||| |||||||||||||||    
T  39299473 aataatatttgagtaccaccaaaataa 39299499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 159
Target Start/End: Original strand, 10781363 - 10781422
Alignment:
Q  100 gaaatataatttgcattattgtttctttgaaattttagcttcacatgtacctaaagtctg 159  Q
    |||||||| ||||||||||||||||||| ||||||||||||| | |||||||||| ||||    
T  10781363 gaaatatagtttgcattattgtttctttaaaattttagcttcgcgtgtacctaaaatctg 10781422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 318
Target Start/End: Original strand, 39306976 - 39307088
Alignment:
Q  200 tttttatgatgggattttgaatataaccaaaaatcacgatgaacattaaaagatgttgaaaatctacatttttagatgtagtagagaagtttaataatgg 299  Q
    |||||||| ||||||||| |||| | | |||||||  ||||||||||||||||||     |||||||| |||||||||||| |||||||| ||||| |||    
T  39306976 tttttatgttgggattttaaatacagc-aaaaatcttgatgaacattaaaagatg-----aatctacaattttagatgtagaagagaagtataatattgg 39307069  T
Q  300 gaatataagataatatttg 318  Q
    || || || | ||||||||    
T  39307070 gattaaaaaagaatatttg 39307088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 164
Target Start/End: Complemental strand, 41006179 - 41006125
Alignment:
Q  110 ttgcattattgtttctttgaaattttagcttcacatgtacctaaagtctgaatcc 164  Q
    ||||||||| |||| ||||||||||||||| ||||||||| ||||||||| ||||    
T  41006179 ttgcattatcgtttttttgaaattttagctccacatgtacgtaaagtctggatcc 41006125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 9539761 - 9539825
Alignment:
Q  101 aaatataatttgcattattgtttctttgaaattttagcttcacatgtacctaaagtctgaatccg 165  Q
    ||||||| ||||||||||||||||||||||||||||   |||||| |||  |||||||| |||||    
T  9539761 aaatatagtttgcattattgtttctttgaaattttaatctcacatatactaaaagtctggatccg 9539825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 27464376 - 27464425
Alignment:
Q  101 aaatataatttgcattattgtttctttgaaattttagcttcacatgtacc 150  Q
    ||||||| |||| ||| |||||| |||||||||||||| |||||||||||    
T  27464376 aaatatagtttgtattgttgtttatttgaaattttagcctcacatgtacc 27464425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 281155 - 281191
Alignment:
Q  102 aatataatttgcattattgtttctttgaaattttagc 138  Q
    |||||||||||||||||||||||||  ||||||||||    
T  281155 aatataatttgcattattgtttcttcaaaattttagc 281191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 9516774 - 9516810
Alignment:
Q  102 aatataatttgcattattgtttctttgaaattttagc 138  Q
    |||||||||||||||||||||||||  ||||||||||    
T  9516774 aatataatttgcattattgtttcttcaaaattttagc 9516810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 23347843 - 23347807
Alignment:
Q  102 aatataatttgcattattgtttctttgaaattttagc 138  Q
    |||||| ||||||||||||||| ||||||||||||||    
T  23347843 aatatagtttgcattattgtttatttgaaattttagc 23347807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 102 - 164
Target Start/End: Complemental strand, 24309863 - 24309801
Alignment:
Q  102 aatataatttgcattattgtttctttgaaattttagcttcacatgtacctaaagtctgaatcc 164  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  24309863 aatatagtttgcattattgtttctttgaaattttagcttcgcatgtacctaaagtctggatcc 24309801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 8034743 - 8034693
Alignment:
Q  109 tttgcattattgtttctttgaaattttagcttcacatgtacctaaagtctg 159  Q
    ||||||||||| ||| ||||||||||||||| |||||||||||||||||||    
T  8034743 tttgcattattatttatttgaaattttagctccacatgtacctaaagtctg 8034693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 7856484 - 7856447
Alignment:
Q  102 aatataatttgcattattgtttctttgaaattttagct 139  Q
    ||||||||||||||||||||||||||||||||||||||    
T  7856484 aatataatttgcattattgtttctttgaaattttagct 7856447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 7729032 - 7729072
Alignment:
Q  125 tttgaaattttagcttcacatgtacctaaagtctgaatccg 165  Q
    |||||||||||| || |||||||||||||||||||||||||    
T  7729032 tttgaaattttaactccacatgtacctaaagtctgaatccg 7729072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 38572596 - 38572544
Alignment:
Q  115 ttattgtttctttgaaattttagcttcacatgtacctaaagtctgaatccgtc 167  Q
    ||||| ||| |||||||||||| || ||||||||||||||||||| |||||||    
T  38572596 ttattatttatttgaaattttatctccacatgtacctaaagtctggatccgtc 38572544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 143
Target Start/End: Original strand, 19832045 - 19832086
Alignment:
Q  102 aatataatttgcattattgtttctttgaaattttagcttcac 143  Q
    |||||||||||||||||||||||||  |||||||||| ||||    
T  19832045 aatataatttgcattattgtttcttcaaaattttagcctcac 19832086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 25032224 - 25032276
Alignment:
Q  106 taatttgcattattgtttctttgaaattttagcttcacatgtacctaaagtct 158  Q
    ||||||||||||||||| |||||||| ||||||  |||||||| | |||||||    
T  25032224 taatttgcattattgttcctttgaaaatttagccccacatgtatcaaaagtct 25032276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 35504224 - 35504260
Alignment:
Q  102 aatataatttgcattattgtttctttgaaattttagc 138  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  35504224 aatataatttgcattattttttcttttaaattttagc 35504260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 165
Target Start/End: Complemental strand, 44873272 - 44873209
Alignment:
Q  102 aatataatttgcattattgtttctttgaaattttagcttcacatgtacctaaagtctgaatccg 165  Q
    |||||| ||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||    
T  44873272 aatatagtttgcattattgtttctttaaaattttagctccgcatgtacctaaagtctgaatccg 44873209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 109 - 156
Target Start/End: Complemental strand, 18075782 - 18075735
Alignment:
Q  109 tttgcattattgtttctttgaaattttagcttcacatgtacctaaagt 156  Q
    ||||||||||| ||| ||||||||||||| | ||||||||||||||||    
T  18075782 tttgcattattatttatttgaaattttagttccacatgtacctaaagt 18075735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 144
Target Start/End: Complemental strand, 10381408 - 10381366
Alignment:
Q  102 aatataatttgcattattgtttctttgaaattttagcttcaca 144  Q
    |||||| ||| |||||||||||||||||||||||||| |||||    
T  10381408 aatatagtttacattattgtttctttgaaattttagcctcaca 10381366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 171
Target Start/End: Original strand, 11995263 - 11995325
Alignment:
Q  109 tttgcattattgtttctttgaaattttagcttcacatgtacctaaagtctgaatccgtctctg 171  Q
    |||| |||||| ||| ||| ||||||||||| ||||| |||||||||| || |||||||||||    
T  11995263 tttgtattattatttatttaaaattttagctccacatatacctaaagtttggatccgtctctg 11995325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 34697094 - 34697143
Alignment:
Q  116 tattgtttctttgaaattttagcttcacatgtacctaaagtctgaatccg 165  Q
    |||| ||| ||| ||||||||||| ||||||||||||||||||| |||||    
T  34697094 tattatttatttaaaattttagctccacatgtacctaaagtctggatccg 34697143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 165
Target Start/End: Complemental strand, 36247814 - 36247751
Alignment:
Q  102 aatataatttgcattattgtttctttgaaattttagcttcacatgtacctaaagtctgaatccg 165  Q
    |||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||    
T  36247814 aatatagtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccg 36247751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 102 - 159
Target Start/End: Complemental strand, 4377223 - 4377166
Alignment:
Q  102 aatataatttgcattattgtttctttgaaattttagcttcacatgtacctaaagtctg 159  Q
    |||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  4377223 aatatagtttgcattattgtttctttgaaattatagctccacatgtacctaaagtctg 4377166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 102 - 165
Target Start/End: Complemental strand, 2813976 - 2813913
Alignment:
Q  102 aatataatttgcattattgtttctttgaaattttagcttcacatgtacctaaagtctgaatccg 165  Q
    |||||| ||||||||||||||||||||||||||||||| || || |||| ||||||||||||||    
T  2813976 aatatagtttgcattattgtttctttgaaattttagctccatatataccaaaagtctgaatccg 2813913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 21161520 - 21161562
Alignment:
Q  106 taatttgcattattgtttctttgaaattttagcttcacatgta 148  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  21161520 taatttgcattattgtttctttgaaattttaacttcacatgta 21161562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 103 - 150
Target Start/End: Complemental strand, 1758255 - 1758208
Alignment:
Q  103 atataatttgcattattgtttctttgaaattttagcttcacatgtacc 150  Q
    ||||| ||| ||||||||||||||||||||||||||  ||||||||||    
T  1758255 atatagtttacattattgtttctttgaaattttagccccacatgtacc 1758208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 158
Target Start/End: Complemental strand, 33518016 - 33517960
Alignment:
Q  102 aatataatttgcattattgtttctttgaaattttagcttcacatgtacctaaagtct 158  Q
    ||||||||||| |||||||||||||| |||||||| || | ||| ||||||| ||||    
T  33518016 aatataatttgtattattgtttctttaaaattttaactccgcatatacctaatgtct 33517960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 102 - 167
Target Start/End: Complemental strand, 36744924 - 36744858
Alignment:
Q  102 aatataatttgcattattgtttctttgaaatttt-agcttcacatgtacctaaagtctgaatccgtc 167  Q
    |||||| ||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||    
T  36744924 aatatagtttgcattattgtttctttaaaatttttagctccacatgtacctaaagtctgaatccgtc 36744858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 167
Target Start/End: Complemental strand, 26459672 - 26459614
Alignment:
Q  109 tttgcattattgtttctttgaaattttagcttcacatgtacctaaagtctgaatccgtc 167  Q
    ||||||| |||||||||||||||||||||||  |||||||||||||||||  |||||||    
T  26459672 tttgcataattgtttctttgaaattttagctcaacatgtacctaaagtctcgatccgtc 26459614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 147
Target Start/End: Original strand, 34751196 - 34751241
Alignment:
Q  102 aatataatttgcattattgtttctttgaaattttagcttcacatgt 147  Q
    |||||||||||||||||||||||||||||||||||||  |||||||    
T  34751196 aatataatttgcattattgtttctttgaaattttagccccacatgt 34751241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 7607396 - 7607451
Alignment:
Q  109 tttgcattattgtttctttgaaattttagcttcacatgtacctaaagtctgaatcc 164  Q
    |||| |||||| ||| ||||||||||||||| ||||||||||||||||||| ||||    
T  7607396 tttgtattattatttatttgaaattttagctccacatgtacctaaagtctggatcc 7607451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 33824853 - 33824889
Alignment:
Q  102 aatataatttgcattattgtttctttgaaattttagc 138  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  33824853 aatatattttgcattattgtttctttaaaattttagc 33824889  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 6141443 - 6141393
Alignment:
Q  109 tttgcattattgtttctttgaaattttagcttcacatgtacctaaagtctg 159  Q
    ||||||||||| ||| ||||||||||||||| |||||||||||||||||||    
T  6141443 tttgcattattatttatttgaaattttagctccacatgtacctaaagtctg 6141393  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 40372710 - 40372649
Alignment:
Q  112 gcattattgtttctttgaaattttagcttcacatgtacctaaagtctgaatccgtctctgat 173  Q
    |||||||| ||| |||||||| |||||| |||||| |||||||||||| ||||||| |||||    
T  40372710 gcattattatttatttgaaatcttagctccacatggacctaaagtctggatccgtccctgat 40372649  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 18703766 - 18703802
Alignment:
Q  102 aatataatttgcattattgtttctttgaaattttagc 138  Q
    |||||| ||||||||||||||||||||||||||||||    
T  18703766 aatatagtttgcattattgtttctttgaaattttagc 18703802  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 109 - 156
Target Start/End: Original strand, 2081774 - 2081821
Alignment:
Q  109 tttgcattattgtttctttgaaattttagcttcacatgtacctaaagt 156  Q
    ||||||||||  ||| ||||||||||||||| ||||||||||||||||    
T  2081774 tttgcattatcatttatttgaaattttagctccacatgtacctaaagt 2081821  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 165
Target Start/End: Complemental strand, 11562143 - 11562089
Alignment:
Q  111 tgcattattgtttctttgaaattttagcttcacatgtacctaaagtctgaatccg 165  Q
    ||||||||||||||||||||| | |||| ||||||||| | |||||||| |||||    
T  11562143 tgcattattgtttctttgaaaatctagcctcacatgtatcaaaagtctggatccg 11562089  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 18458760 - 18458704
Alignment:
Q  109 tttgcattattgtttctttgaaattttagcttcacatgtacctaaagtctgaatccg 165  Q
    ||||||||||| ||| ||||| ||||||||| ||||| ||||||||| ||| |||||    
T  18458760 tttgcattattatttatttgacattttagctccacatatacctaaagcctggatccg 18458704  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 163
Target Start/End: Original strand, 17848978 - 17849032
Alignment:
Q  109 tttgcattattgtttctttgaaattttagcttcacatgtacctaaagtctgaatc 163  Q
    ||||||||||||||||||| |||||||| || |||||||||| || |||||||||    
T  17848978 tttgcattattgtttctttaaaattttaactccacatgtaccaaatgtctgaatc 17849032  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 14607866 - 14607922
Alignment:
Q  109 tttgcattattgtttctttgaaattttagcttcacatgtacctaaagtctgaatccg 165  Q
    ||||||||||||||||||||||||||||||  | ||| |||| |||||||| |||||    
T  14607866 tttgcattattgtttctttgaaattttagccccccatataccaaaagtctggatccg 14607922  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 16461748 - 16461784
Alignment:
Q  102 aatataatttgcattattgtttctttgaaattttagc 138  Q
    |||||| ||||||||||||||||||||||||||||||    
T  16461748 aatatagtttgcattattgtttctttgaaattttagc 16461784  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 137
Target Start/End: Complemental strand, 6689195 - 6689160
Alignment:
Q  102 aatataatttgcattattgtttctttgaaattttag 137  Q
    ||||||||||||||||||||||||||| ||||||||    
T  6689195 aatataatttgcattattgtttctttgtaattttag 6689160  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 167
Target Start/End: Complemental strand, 35188014 - 35187961
Alignment:
Q  114 attattgtttctttgaaattttagcttcacatgtacctaaagtctgaatccgtc 167  Q
    |||||| ||| ||| ||||||||||| |||||| |||||||||||| |||||||    
T  35188014 attattatttatttaaaattttagctccacatgaacctaaagtctggatccgtc 35187961  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 170
Target Start/End: Complemental strand, 1691591 - 1691534
Alignment:
Q  113 cattattgtttctttgaaattttagcttcacatgtacctaaagtctgaatccgtctct 170  Q
    ||||||| ||| ||||||||||||||| ||||| ||||||||||||  ||||||||||    
T  1691591 cattattatttatttgaaattttagctccacatatacctaaagtctcgatccgtctct 1691534  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 7899471 - 7899435
Alignment:
Q  102 aatataatttgcattattgtttctttgaaattttagc 138  Q
    |||||||||||||||||||||||||  ||||||||||    
T  7899471 aatataatttgcattattgtttcttcaaaattttagc 7899435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 10702721 - 10702673
Alignment:
Q  109 tttgcattattgtttctttgaaattttagcttcacatgtacctaaagtc 157  Q
    ||||||||||| ||| ||||| ||||||||| ||||| |||||||||||    
T  10702721 tttgcattattatttatttgacattttagctccacatatacctaaagtc 10702673  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 10703221 - 10703277
Alignment:
Q  109 tttgcattattgtttctttgaaattttagcttcacatgtacctaaagtctgaatccg 165  Q
    ||||||||||| ||| ||||| |||||| || ||||| ||||||||||||| |||||    
T  10703221 tttgcattattatttatttgacattttaactccacatatacctaaagtctggatccg 10703277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 26050151 - 26050115
Alignment:
Q  102 aatataatttgcattattgtttctttgaaattttagc 138  Q
    |||||||||||||||||||||||||  ||||||||||    
T  26050151 aatataatttgcattattgtttcttcaaaattttagc 26050115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 26059510 - 26059474
Alignment:
Q  102 aatataatttgcattattgtttctttgaaattttagc 138  Q
    |||||||||||||||||||||||||  ||||||||||    
T  26059510 aatataatttgcattattgtttcttcaaaattttagc 26059474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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