View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9402_low_8 (Length: 233)

Name: NF9402_low_8
Description: NF9402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9402_low_8
NF9402_low_8
[»] chr8 (3 HSPs)
chr8 (1-198)||(29096968-29097164)
chr8 (142-189)||(12225011-12225058)
chr8 (3-33)||(10356887-10356917)
[»] chr4 (1 HSPs)
chr4 (147-186)||(36778069-36778108)
[»] chr7 (3 HSPs)
chr7 (1-31)||(38957349-38957379)
chr7 (142-190)||(27378938-27378986)
chr7 (1-33)||(46179915-46179947)
[»] chr2 (2 HSPs)
chr2 (142-187)||(27237973-27238018)
chr2 (1-33)||(17292100-17292132)
[»] chr6 (1 HSPs)
chr6 (5-33)||(32577469-32577497)
[»] chr5 (2 HSPs)
chr5 (142-190)||(13508443-13508491)
chr5 (142-190)||(21782680-21782728)


Alignment Details
Target: chr8 (Bit Score: 174; Significance: 9e-94; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 29096968 - 29097164
Alignment:
Q  1 aataaattaattgaatgtaatcacatgtgtcggcaccaaacacatcagtgctatcgagctttgaggccttttcttattaaatagacagaaaaccaatctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  29096968 aataaattaattgaatgtaatcacatgtgtcggcaccaaacacatcagtgctaccgagctttgaggccttttcttattaaatagacagaaagccaatctt 29097067  T
Q  101 ctagagatatatgacatcaaagattttatggattttgggggtgtttggataaacaacttaattatgaacttatgtataagctatttctatgaacaaag 198  Q
    ||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29097068 ctagagatatatgacatcagagattttatagatttt-ggggtgtttggataaacaacttaattatgaacttatgtataagctatttctatgaacaaag 29097164  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 189
Target Start/End: Complemental strand, 12225058 - 12225011
Alignment:
Q  142 tgtttggataaacaacttaattatgaacttatgtataagctatttcta 189  Q
    ||||||||||||||||||||||| || |||||||||||| ||||||||    
T  12225058 tgtttggataaacaacttaattaagagcttatgtataagttatttcta 12225011  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 33
Target Start/End: Original strand, 10356887 - 10356917
Alignment:
Q  3 taaattaattgaatgtaatcacatgtgtcgg 33  Q
    |||||||||||||||||||||||||||||||    
T  10356887 taaattaattgaatgtaatcacatgtgtcgg 10356917  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 186
Target Start/End: Complemental strand, 36778108 - 36778069
Alignment:
Q  147 ggataaacaacttaattatgaacttatgtataagctattt 186  Q
    |||||||||||||||||| | |||||||||||||||||||    
T  36778108 ggataaacaacttaattaagcacttatgtataagctattt 36778069  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 38957379 - 38957349
Alignment:
Q  1 aataaattaattgaatgtaatcacatgtgtc 31  Q
    |||||||||||||||||||||||||||||||    
T  38957379 aataaattaattgaatgtaatcacatgtgtc 38957349  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 27378986 - 27378938
Alignment:
Q  142 tgtttggataaacaacttaattatgaacttatgtataagctatttctat 190  Q
    |||||||| |||||||| ||||| |  ||||||||||||||||||||||    
T  27378986 tgtttggacaaacaactaaattaagtgcttatgtataagctatttctat 27378938  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 46179947 - 46179915
Alignment:
Q  1 aataaattaattgaatgtaatcacatgtgtcgg 33  Q
    |||||||||||||||| ||||||||||||||||    
T  46179947 aataaattaattgaatataatcacatgtgtcgg 46179915  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 27238018 - 27237973
Alignment:
Q  142 tgtttggataaacaacttaattatgaacttatgtataagctatttc 187  Q
    |||||||||||||||||||| || |  |||||||||||||||||||    
T  27238018 tgtttggataaacaacttaactaagtgcttatgtataagctatttc 27237973  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 17292132 - 17292100
Alignment:
Q  1 aataaattaattgaatgtaatcacatgtgtcgg 33  Q
    |||||||||||||||||| ||||||||||||||    
T  17292132 aataaattaattgaatgtcatcacatgtgtcgg 17292100  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 33
Target Start/End: Complemental strand, 32577497 - 32577469
Alignment:
Q  5 aattaattgaatgtaatcacatgtgtcgg 33  Q
    |||||||||||||||||||||||||||||    
T  32577497 aattaattgaatgtaatcacatgtgtcgg 32577469  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 13508443 - 13508491
Alignment:
Q  142 tgtttggataaacaacttaattatgaacttatgtataagctatttctat 190  Q
    ||||||||||||||||||||||| |   |||||| ||||||||||||||    
T  13508443 tgtttggataaacaacttaattaagtgtttatgtttaagctatttctat 13508491  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 21782728 - 21782680
Alignment:
Q  142 tgtttggataaacaacttaattatgaacttatgtataagctatttctat 190  Q
    ||||||||||||||||||||||| |   |||||| ||||||||||||||    
T  21782728 tgtttggataaacaacttaattaagtgtttatgtttaagctatttctat 21782680  T

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