View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9403_low_1 (Length: 583)
Name: NF9403_low_1
Description: NF9403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9403_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 145 - 556
Target Start/End: Original strand, 39690820 - 39691231
Alignment:
| Q |
145 |
gtgtcttaaccatataataatcgagagtttggctaaaaagcaagtaaaatttagtcgatgattgtttccgtcagaatatgaattcagatcgatctcctga |
244 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39690820 |
gtgtcttaaccatataataatggagagtttggctaaaaagcaagtaaaatttagtcgatgattgtttccgtcagaatatgaattcagatcgatctcctga |
39690919 |
T |
|
| Q |
245 |
actatttgttgctcaatgagctcattcttgagctcaatcacttgatatcaaaagcatgtcaatattatttaaatggttatannnnnnnnnnnnnnnngtt |
344 |
Q |
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||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
39690920 |
actatttgtcgctcaatgagctcattcttgagctgaatcacttgatataaaaagcatgtcaatattatttaaatggttatattttttattttattttgtt |
39691019 |
T |
|
| Q |
345 |
gattaattataggtatgataacggggttgtcacttgcaagcactggaattgttggaaacttgattgtatatcttataagtgaattcaatatcaagagcat |
444 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39691020 |
gattaattataggtatgataacggggttgtcacttgcaagcactggaattgttggaaacttgattgtatatcttataagtgaattcaatatcaagagcat |
39691119 |
T |
|
| Q |
445 |
caatgcagctcagattgtaaacgttgttgttggaagcacaagtctatttccacttgttgcagcaatccttgctgactctttctttggctcattcttagtt |
544 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39691120 |
caatgcagctcagattgtaaacgttgttgttggaagcacaagtctatttccacttgttgcagcaatccttgctgactctttctttggctcattcttagtt |
39691219 |
T |
|
| Q |
545 |
gcctttgcttct |
556 |
Q |
| |
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|||||||||||| |
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| T |
39691220 |
gcctttgcttct |
39691231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 39690667 - 39690796
Alignment:
| Q |
1 |
gcttgagtattgggagcaaacgtggtggttggataagtttcactttcttcattggtctctctctttttcctttcatcttcttactcatcaaacattatta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
39690667 |
gcttgagtattgggagcaaacgtggtggttggataagtttccctttcttcattggtctctctctttttcctttcatgttcttactcatcaaacattatta |
39690766 |
T |
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| Q |
101 |
attcactcacttttacacatctaaagagta |
130 |
Q |
| |
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||||||||||| |||||||||||||||||| |
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| T |
39690767 |
attcactcactcttacacatctaaagagta |
39690796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 352 - 556
Target Start/End: Complemental strand, 39931190 - 39930986
Alignment:
| Q |
352 |
tataggtatgataacggggttgtcacttgcaagcactggaattgttggaaacttgattgtatatcttataagtgaattcaatatcaagagcatcaatgca |
451 |
Q |
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||||||||||||| ||||| ||||||||| |||||| ||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||| |||| |
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| T |
39931190 |
tataggtatgatagcggggatgtcacttggaagcaccggaattgttggaaacttgattgtatatcttacaagagaattcaatataaagagcatcactgca |
39931091 |
T |
|
| Q |
452 |
gctcagattgtaaacgttgttgttggaagcacaagtctatttccacttgttgcagcaatccttgctgactctttctttggctcattcttagttgcctttg |
551 |
Q |
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|||| ||| ||| ||||| ||||||||||| ||| |||||||| | || || |||||| ||||||| ||||||||||| || |||| |||||||||| |
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| T |
39931090 |
actcaaatttcaaatgttgtcgttggaagcaccagtatatttccagtagtggccgcaatcgttgctgattctttctttggttctttctatgttgcctttg |
39930991 |
T |
|
| Q |
552 |
cttct |
556 |
Q |
| |
|
||||| |
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| T |
39930990 |
cttct |
39930986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 349 - 550
Target Start/End: Original strand, 39700213 - 39700414
Alignment:
| Q |
349 |
aattataggtatgataacggggttgtcacttgcaagcactggaattgttggaaacttgattgtatatcttataagtgaattcaatatcaagagcatcaat |
448 |
Q |
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||||||||||||| || ||||||||||||| ||||| | ||||||| || || ||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
39700213 |
aattataggtatggtagcggggttgtcactagcaagtgcaggaattggggggaatttgattgtatatcttataaaagaattcaatataaagagcatcaat |
39700312 |
T |
|
| Q |
449 |
gcagctcagattgtaaacgttgttgttggaagcacaagtctatttccacttgttgcagcaatccttgctgactctttctttggctcattcttagttgcct |
548 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| | | |||||| ||| | |||| |||||||||||||| |||||||||||||| |||| ||||||| |
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| T |
39700313 |
gcagctcaaattgtaaacgttgttgttggaagctccaatctattaccaatcattgctgcaatccttgctgattctttctttggctctttctctgttgcct |
39700412 |
T |
|
| Q |
549 |
tt |
550 |
Q |
| |
|
|| |
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|
| T |
39700413 |
tt |
39700414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 39931687 - 39931573
Alignment:
| Q |
1 |
gcttgagtattgggagcaaacgtggtggttggataagtttcactttcttcattggtctctctctttttcctttcatcttcttactcatcaaacattatta |
100 |
Q |
| |
|
|||| |||| ||||||||| ||||| ||||||||||||| | |||||||||||||||||||| ||||||||||||||| | |||||||||||||||||| |
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| T |
39931687 |
gcttaagtaatgggagcaagcgtggcggttggataagttcccctttcttcattggtctctct--ttttcctttcatcttttaactcatcaaacattatta |
39931590 |
T |
|
| Q |
101 |
attcactcacttttaca |
117 |
Q |
| |
|
||||||||||||||||| |
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| T |
39931589 |
attcactcacttttaca |
39931573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 39699785 - 39699859
Alignment:
| Q |
3 |
ttgagtattgggagcaaacgtggtggttggataagtttcactttcttcattggtctctctctttttcctttcatctt |
79 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||| ||||||||||||| | |||||| ||||||||||||| |
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| T |
39699785 |
ttgagtattgggagcaagcgtggtggttggataagtttccctttcttcattgg--tatctcttcttcctttcatctt |
39699859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 14 - 91
Target Start/End: Complemental strand, 39937057 - 39936980
Alignment:
| Q |
14 |
gagcaaacgtggtggttggataagtttcactttcttcattggtctctctctttttcctttcatcttcttactcatcaa |
91 |
Q |
| |
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|||||| ||||| ||||||||||||||| | |||||||||||| ||||||||||| |||||||||| | ||||||||| |
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| T |
39937057 |
gagcaagcgtggcggttggataagtttccccttcttcattggtttctctctttttactttcatcttttaactcatcaa |
39936980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 408 - 482
Target Start/End: Complemental strand, 39935391 - 39935317
Alignment:
| Q |
408 |
ttgtatatcttataagtgaattcaatatcaagagcatcaatgcagctcagattgtaaacgttgttgttggaagca |
482 |
Q |
| |
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|||||||||||||| ||||||||||| |||||||||| ||| ||||||||||||||| ||||| | ||||||| |
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| T |
39935391 |
ttgtatatcttatacaagaattcaatataaagagcatcattgctgctcagattgtaaacattgttatcggaagca |
39935317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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