View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9403_low_16 (Length: 253)
Name: NF9403_low_16
Description: NF9403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9403_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 92; Significance: 9e-45; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 69 - 223
Target Start/End: Original strand, 7879441 - 7879589
Alignment:
| Q |
69 |
taatttaaaattaatgagttacacatgaattcatgaatttataagactttagatcagaaaaaacattaatattaaatcacccaatgatcctatatattaa |
168 |
Q |
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| T |
7879441 |
taatttaaaattaatgagttacacatgaattcatgaatttataagacgttagatcagaagacacatcaatattaaatcacccaacgatccta------aa |
7879534 |
T |
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| Q |
169 |
tattgctacaattacaacttaaagtcttaacgctagactttattccatgaataaa |
223 |
Q |
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| T |
7879535 |
tagtgctacaattgcaacttatagtcttaacactagactttattcaatgaataaa |
7879589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 7772930 - 7772879
Alignment:
| Q |
1 |
tgttttatatggtaaattaatctgatgag-ttagacatgttgaagtaaaaaa |
51 |
Q |
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| T |
7772930 |
tgttttatatggtaaattaatctgatgagtttatacatgttgaaggaaaaaa |
7772879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 50674911 - 50674975
Alignment:
| Q |
100 |
catgaatttataagactttagatcagaaaaaacattaatattaaatcacccaatgatcctatata |
164 |
Q |
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| T |
50674911 |
catgaatttataagacttcagaccagtagaaacatcaaaactcaatcaccccatgatcctatata |
50674975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 48885020 - 48885080
Alignment:
| Q |
100 |
catgaatttataagactttagatcagaaaaaacattaatattaaatcacccaatgatccta |
160 |
Q |
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| T |
48885020 |
catgaatttataagatttgaggtcagaagaaacatcaaaattaaatcacccaatgatccta |
48885080 |
T |
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