View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9403_low_19 (Length: 247)
Name: NF9403_low_19
Description: NF9403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9403_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 14038714 - 14038803
Alignment:
| Q |
1 |
tagaaatgcgttcttgagtataggtaactagaaatctctaggacttgatggattccacccaattttcttcaaaaatcaatggaggataga |
90 |
Q |
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| T |
14038714 |
tagaaaagcgttcttgagtataggtaactagaaatctctaggacatgatggattccacccaattttcttcaaaaatcaatgcaggataga |
14038803 |
T |
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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 188 - 231
Target Start/End: Original strand, 14038846 - 14038889
Alignment:
| Q |
188 |
aatcatcttactaaagcgagtcacctcagagccattgttttatg |
231 |
Q |
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| T |
14038846 |
aatcatcttactaaagcgagtcacctcagagccattgctttatg |
14038889 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 231
Target Start/End: Original strand, 39882855 - 39882961
Alignment:
| Q |
125 |
tttaccaatcctactaaaattagggagctaaatcacactcttattactttgatttctaaatgaaatcatcttactaaagcgagtcacctcagagccattg |
224 |
Q |
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| T |
39882855 |
tttaccattccttctaagatcaaggagctaaatcagattcttatcactatgattccgaaatgtaatgatcctattaaagtgaatcacctcagacccattg |
39882954 |
T |
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| Q |
225 |
ttttatg |
231 |
Q |
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| T |
39882955 |
ctttatg |
39882961 |
T |
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