View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9403_low_24 (Length: 228)
Name: NF9403_low_24
Description: NF9403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9403_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 34883263 - 34883040
Alignment:
| Q |
1 |
gttaccagttatgtcctgttattgtgccagtacaccacatcctcgtactgttaatgttgttggttcctcttcatgttctctattaaacaagacatttaag |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34883263 |
gttaccagttatgtcctgttattgtgcgagtacaccacatcctcgtactgttaatgttgttggttcctcttcatgttctctattaaacaagacatttaag |
34883164 |
T |
|
| Q |
101 |
aatgctcctcgacgcatgttattagtctttggagcatcttcattcttgtctcactttatcactaacatgtctgcttctggtttcaaatccttcattgctt |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34883163 |
aatgctcctcgacgcatgttattaggctttggagcatcttcattcttgtctcactttatcactaacatgtctgcttctggtttcaaatccttcattgctt |
34883064 |
T |
|
| Q |
201 |
ctgcaaaaataaccgctggtccct |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
34883063 |
ctgcaaaaataaccgctggtccct |
34883040 |
T |
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