View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9403_low_6 (Length: 448)
Name: NF9403_low_6
Description: NF9403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9403_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 19 - 433
Target Start/End: Complemental strand, 14983534 - 14983117
Alignment:
| Q |
19 |
catcaaaataaatgaagaatatttttaggttgtgttttatactaccatatattccttcttttatagacaattatcatgaggttaaattgttgaatgatgc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
14983534 |
catcaaaataaatgaagaatatttttaggttgtgttttatactaccatatattccttcttttatagacaattatcatgaggttaaattgctgaatgatgc |
14983435 |
T |
|
| Q |
119 |
tccacagtaatttttaactactttgaagaacaattaaactcataatattaaattaaaccagctgcaaaacatttaaacaagccacttacacatcccaagt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14983434 |
tccacagtaatttttaactactttgaagaacaattaaactcataatattaaattaaaacagctgcaaaacatttaaacaagccacttacacatcccaagt |
14983335 |
T |
|
| Q |
219 |
agcaagctactagtgtgtgtacatctagtactagcacacttattctcatggctagaaagcagtaaaaaacgatcttaataagaatcacacgctcacaaac |
318 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14983334 |
agcaagctactagtgtgtgta-------------cacacttattctcatggctagaaagcagtaaaaaacgatcttaataagaatcacacgctcacaaac |
14983248 |
T |
|
| Q |
319 |
tcaaaaactaggtctagttattgc----------------attcatggattaactgtttctgcagctctaccacctccaccaccactgccaggatttgga |
402 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14983247 |
tcaaaaactaggtctagctattgcattcatggatgagtgaattcatggattaactgtttctgcagctctaccacctccaccaccactgccaggatttgga |
14983148 |
T |
|
| Q |
403 |
acctcaaagccagggtttggaacaaatgtgt |
433 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
14983147 |
acctcaaagccagggtttggaacaaatgtgt |
14983117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 372 - 433
Target Start/End: Complemental strand, 14967094 - 14967033
Alignment:
| Q |
372 |
accacctccaccaccactgccaggatttggaacctcaaagccagggtttggaacaaatgtgt |
433 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14967094 |
accaccgccaccaccactgctgggatttggaacctcaaagccagggtttggaacaaatgtgt |
14967033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University