View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9404_high_3 (Length: 330)
Name: NF9404_high_3
Description: NF9404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9404_high_3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 15 - 330
Target Start/End: Complemental strand, 9378375 - 9378058
Alignment:
| Q |
15 |
tcaccaaggacggatggttcgg-agaatccgagttcgattattgtgtggaacaattctaggtcatatcatctttacctcataaccgaactccggattatc |
113 |
Q |
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| T |
9378375 |
tcaccaaggacggatcgttcgggagaatccgagttccattactgtgtggaacaattctaggtcatatcatatttacctcataaccgaactccggattatc |
9378276 |
T |
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| Q |
114 |
agagcccattttccctaaaaaccagaggattaactaaaaaa-caatacggatgaggatggttgcaattacttgaataacactaaactccaaattgtataa |
212 |
Q |
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| T |
9378275 |
agagcccattttccctaaaaaccagaggattaactaaaaaaacaatacggatgaggatggttgcaattacttgaataacactaaactccaaattgtataa |
9378176 |
T |
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| Q |
213 |
acaaatttattataatgtttccccttctatgtcgttgttaataaagcaggagaaacgtcaaagagaggaggagcatctaaatgtagcaacaataggacat |
312 |
Q |
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| T |
9378175 |
acaaacttattatattgtttccccttctatgccgttgttaataaagcaggagaaacgtcaaagagaggaggagcatctaaatgtagcaacaataggacat |
9378076 |
T |
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| Q |
313 |
catccttctttttgtggt |
330 |
Q |
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| T |
9378075 |
catccttctttttatggt |
9378058 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 35581126 - 35581174
Alignment:
| Q |
98 |
cgaactccggattatcagagcccattttccctaaaaaccagaggattaa |
146 |
Q |
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| T |
35581126 |
cgaactccgaattatcagaatctattttccctaaaaaccaaaggattaa |
35581174 |
T |
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