View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9404_low_1 (Length: 372)
Name: NF9404_low_1
Description: NF9404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9404_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 49951885 - 49952246
Alignment:
| Q |
1 |
tagcatctgtcacattttgttatcattgaacagatcaacacaatcacacacagaatctctctctcactctcattagaaaccatcttgaaaccgattgatc |
100 |
Q |
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| T |
49951885 |
tagcatctgtcacattttgttatcattgaacagatcaacacaatcacacacagaatctctctctcactctcattagaaaccatcttgaaaccgattgatc |
49951984 |
T |
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| Q |
101 |
aatgctgctgaattaggagtatttgtatctaaacgatgctgctgtcctcctcctc------ctgaatagctccttccccaattcaatgtcccttccatat |
194 |
Q |
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| T |
49951985 |
aatgctgctgaattaggagtatttgtatctaaacgatgctgctgtcctcctcctccacctcctgaatagctccttccccaattcaatgtcccttccatat |
49952084 |
T |
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| Q |
195 |
cttgatgatgatccttcccaccactacttcctggaataaaaccttgtctaaccggtgcacctatgcaagtgtaacttgactcaccaccacctgcacctgc |
294 |
Q |
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| T |
49952085 |
cttgatgatgatccttcccaccactacttcctggaataaaaccttgtctaaccggtgcacctatgcaagtgtaacttgactcaccaccacctgcacctgc |
49952184 |
T |
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| Q |
295 |
aacatagttcatgttgtgatattgctggtggtgactgctactcatcacgtgacccacatgat |
356 |
Q |
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| T |
49952185 |
aacatagttcatgttgtgatattgctggtggtgactgctactcatcacgtgacccacatgat |
49952246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 232 - 288
Target Start/End: Complemental strand, 49978932 - 49978876
Alignment:
| Q |
232 |
aaaaccttgtctaaccggtgcacctatgcaagtgtaacttgactcaccaccacctgc |
288 |
Q |
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| T |
49978932 |
aaaaccttgtccaaccggtgcacctatgcacgtgtaacttgactcacctccacctgc |
49978876 |
T |
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