View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9404_low_11 (Length: 298)
Name: NF9404_low_11
Description: NF9404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9404_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 16 - 193
Target Start/End: Complemental strand, 7442552 - 7442375
Alignment:
| Q |
16 |
caattactgtaataaataatcatcaacaagagttttacttagaaaatataacaattgaaggatttgcaactggagcatttcattttccttgcaattcttg |
115 |
Q |
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| T |
7442552 |
caattactgtgataaataatcatcaacaagagttttacttagaaaatataacaattgaaggatttgcaactggagcatttcattttccttgcaattcttg |
7442453 |
T |
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| Q |
116 |
ggttcaagccagaaaagatcttcctggaaagagaattttcttttctaataaggtatctaataattaattcttcaactc |
193 |
Q |
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| T |
7442452 |
ggttcaagccagaaaagatcttcctggaaagagaattttcttttctaataaggtatctaataattaattcttcaactc |
7442375 |
T |
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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 289
Target Start/End: Complemental strand, 7442352 - 7442288
Alignment:
| Q |
224 |
cgttctgtcatcataacatggcccagtaagagnnnnnnnntagtacagccaaagaaatagtataat |
289 |
Q |
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| T |
7442352 |
cgttctgtcatcataacatggcccagtaaga-aaaaaaaatagtacagccaaagaaatagtataat |
7442288 |
T |
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