View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9404_low_15 (Length: 253)
Name: NF9404_low_15
Description: NF9404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9404_low_15 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 12 - 253
Target Start/End: Original strand, 795710 - 795950
Alignment:
| Q |
12 |
ttggtggtgacacacagaaaatgctaatttagcatacacaaaacaaaacgataccaaattcatttaaccacccttttcttcaagtcaacttcgccaataa |
111 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
795710 |
ttggtggtgacatacagaaaatgctaatttagcatacacaaaacaaaacgataccaaattcatttaaccacccttttcttcaagtcaacttcgccaataa |
795809 |
T |
|
| Q |
112 |
tttttgctaccaatcaatttagttgtaggccaatcccattgcatgattcttcacaatacatacataattacaatttcaattcacacgaatttattccccc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
795810 |
tttttgctaccaatcaatttagttgtaggccaatcccattgcatgattcttcacaatacatacat-attacaatttcaattcacacgaatttattccccc |
795908 |
T |
|
| Q |
212 |
ttttgaaagatactctaagccattactcacattccgctcccc |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
795909 |
ttttgaaagatactctaagccattactcacattccactcccc |
795950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University