View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9404_low_19 (Length: 242)

Name: NF9404_low_19
Description: NF9404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9404_low_19
NF9404_low_19
[»] chr5 (7 HSPs)
chr5 (13-235)||(34457899-34458122)
chr5 (106-189)||(23067659-23067742)
chr5 (134-189)||(9042438-9042493)
chr5 (107-188)||(19877064-19877145)
chr5 (104-192)||(16514143-16514231)
chr5 (134-190)||(27014636-27014692)
chr5 (143-191)||(36759192-36759240)
[»] chr4 (16 HSPs)
chr4 (106-221)||(43036438-43036552)
chr4 (143-201)||(36505761-36505819)
chr4 (131-189)||(39390898-39390956)
chr4 (106-186)||(43035766-43035846)
chr4 (107-214)||(39864380-39864487)
chr4 (107-189)||(40729905-40729987)
chr4 (109-191)||(49527455-49527537)
chr4 (110-187)||(25283803-25283880)
chr4 (110-219)||(43123033-43123142)
chr4 (143-191)||(47110742-47110790)
chr4 (106-189)||(2333822-2333905)
chr4 (134-192)||(15502805-15502863)
chr4 (108-189)||(22436038-22436119)
chr4 (134-186)||(32430511-32430563)
chr4 (145-185)||(47110059-47110099)
chr4 (106-185)||(50825975-50826054)
[»] chr3 (6 HSPs)
chr3 (111-221)||(11457343-11457453)
chr3 (107-221)||(44006395-44006508)
chr3 (101-189)||(30715868-30715956)
chr3 (104-189)||(38108769-38108854)
chr3 (107-191)||(44846956-44847040)
chr3 (107-189)||(51014273-51014355)
[»] scaffold0146 (2 HSPs)
scaffold0146 (145-218)||(29954-30026)
scaffold0146 (143-218)||(32296-32370)
[»] chr7 (8 HSPs)
chr7 (98-191)||(47317780-47317873)
chr7 (107-221)||(27866812-27866925)
chr7 (134-189)||(3614408-3614463)
chr7 (107-189)||(41964783-41964865)
chr7 (107-189)||(10555070-10555152)
chr7 (132-189)||(5569325-5569382)
chr7 (110-183)||(21166376-21166448)
chr7 (107-219)||(15336393-15336505)
[»] chr1 (4 HSPs)
chr1 (106-190)||(21762040-21762124)
chr1 (110-189)||(18981486-18981565)
chr1 (106-191)||(37770774-37770859)
chr1 (150-191)||(21761320-21761361)
[»] scaffold0013 (2 HSPs)
scaffold0013 (108-219)||(86868-86979)
scaffold0013 (105-147)||(62381-62423)
[»] chr2 (3 HSPs)
chr2 (106-221)||(4425877-4425991)
chr2 (143-189)||(40614739-40614785)
chr2 (107-147)||(37041660-37041700)
[»] scaffold1903 (1 HSPs)
scaffold1903 (148-189)||(1160-1201)
[»] scaffold0039 (1 HSPs)
scaffold0039 (106-219)||(106760-106873)
[»] chr8 (7 HSPs)
chr8 (102-187)||(6253584-6253669)
chr8 (143-187)||(20086227-20086271)
chr8 (104-187)||(6253299-6253382)
chr8 (103-190)||(24803711-24803798)
chr8 (107-164)||(8316233-8316290)
chr8 (104-189)||(20477174-20477259)
chr8 (142-190)||(45115270-45115318)
[»] chr6 (4 HSPs)
chr6 (137-190)||(16185346-16185399)
chr6 (107-220)||(33523865-33523978)
chr6 (106-147)||(10862279-10862320)
chr6 (106-186)||(5613794-5613874)


Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 34457899 - 34458122
Alignment:
Q  13 atcaaacgattcatattttgattttgtaatcttgaggccatgacaatgtggatggtttt-tgatacacttaaaagaatggcagactttcaaattagaaaa 111  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||| |||    
T  34457899 atcaaacgattcatattttgactttgtaatcttgaggccatgacaatgcggatggttttttgatacacttaaaagaatggccgactttcaaattaggaaa 34457998  T
Q  112 ttgcttttctgacatctataagttcctaataacacaaataaaatacttaaatggccctagcggtagttaactaccgttgacgtatccggcaatagttaac 211  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  34457999 ttgcttttctgacatctataagttcctaataacacaagtaaaatacttaaatggctctagcggtagttaactaccgttgacgtatccggcaatagttaac 34458098  T
Q  212 taccgctgaaggtggtttagctac 235  Q
    ||||||||||||||||||||||||    
T  34458099 taccgctgaaggtggtttagctac 34458122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 189
Target Start/End: Complemental strand, 23067742 - 23067659
Alignment:
Q  106 agaaaattgcttttctgacatctataagttcctaataacacaaataaaatacttaaatggccctagcggtagttaactaccgtt 189  Q
    |||||||||||||||||||||  | ||||||| | | |||||| |||| |||||||| | | | ||||||||||||||||||||    
T  23067742 agaaaattgcttttctgacattgaaaagttccaattgacacaagtaaattacttaaacgcctccagcggtagttaactaccgtt 23067659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 189
Target Start/End: Complemental strand, 9042493 - 9042438
Alignment:
Q  134 ttcctaataacacaaataaaatacttaaatggccctagcggtagttaactaccgtt 189  Q
    |||||| |||||||| ||||||| ||||||  ||| ||||||||||||||||||||    
T  9042493 ttcctattaacacaagtaaaatatttaaatacccccagcggtagttaactaccgtt 9042438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 188
Target Start/End: Complemental strand, 19877145 - 19877064
Alignment:
Q  107 gaaaattgcttttctgacatctataagttcctaataacacaaataaaatacttaaatggccctagcggtagttaactaccgt 188  Q
    ||||||||||||||||||||  | ||||||| | | |||||| |||| |||||||| | || || | |||||||||||||||    
T  19877145 gaaaattgcttttctgacattgaaaagttccaattgacacaagtaaattacttaaacgcccataccagtagttaactaccgt 19877064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 192
Target Start/End: Original strand, 16514143 - 16514231
Alignment:
Q  104 ttagaaaattgcttttctgacatctataagttcctaataacacaaataaaatacttaaatggccctagcggtagttaactaccgttgac 192  Q
    ||||| ||||||| |||| ||||| | || ||||||| ||||||| ||||||||| |||   |  ||||||||||||||||||| ||||    
T  16514143 ttagacaattgctattctaacatccaaaaattcctaaaaacacaagtaaaatactaaaacacctttagcggtagttaactaccgctgac 16514231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 190
Target Start/End: Complemental strand, 27014692 - 27014636
Alignment:
Q  134 ttcctaataacacaaataaaatacttaaatggccctagcggtagttaactaccgttg 190  Q
    |||||| |||||||| ||||  || | |||| |||||||||||||||||||||||||    
T  27014692 ttcctattaacacaattaaatgacgttaatgtccctagcggtagttaactaccgttg 27014636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 191
Target Start/End: Complemental strand, 36759240 - 36759192
Alignment:
Q  143 acacaaataaaatacttaaatggccctagcggtagttaactaccgttga 191  Q
    |||||| |||||||| | |||| ||| ||||||||||||||||||||||    
T  36759240 acacaagtaaaatacctgaatgcccccagcggtagttaactaccgttga 36759192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 106 - 221
Target Start/End: Complemental strand, 43036552 - 43036438
Alignment:
Q  106 agaaaattgcttttctgacatctataagttcctaataacacaaataaaatacttaaatggccctagcggtagttaactaccgttgacgtatccggcaata 205  Q
    |||||||||||||| ||||||  | || |||  ||| |||||| ||||||||||||||| |||||||||||||||||||||||||| | | ||||||  |    
T  43036552 agaaaattgcttttttgacataaaaaacttcacaatgacacaagtaaaatacttaaatgcccctagcggtagttaactaccgttga-ggacccggcagca 43036454  T
Q  206 gttaactaccgctgaa 221  Q
    ||||||||||||||||    
T  43036453 gttaactaccgctgaa 43036438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 36505761 - 36505819
Alignment:
Q  143 acacaaataaaatacttaaatggccctagcggtagttaactaccgttgacgtatccggc 201  Q
    |||||||||||||||||||||  ||| ||||||||||||||||||||||| ||||||||    
T  36505761 acacaaataaaatacttaaatacccccagcggtagttaactaccgttgacatatccggc 36505819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 39390956 - 39390898
Alignment:
Q  131 aagttcctaataacacaaataaaatacttaaatggccctagcggtagttaactaccgtt 189  Q
    ||||||||| |||||||||||||||||||||||  ||||||||||||||||| ||||||    
T  39390956 aagttcctattaacacaaataaaatacttaaatacccctagcggtagttaacaaccgtt 39390898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 186
Target Start/End: Original strand, 43035766 - 43035846
Alignment:
Q  106 agaaaattgcttttctgacatctataagttcctaataacacaaataaaatacttaaatggccctagcggtagttaactacc 186  Q
    |||||||||||||||||||||  ||||||||  | | |||||| |||||||| |||||| |||  ||||||||||||||||    
T  43035766 agaaaattgcttttctgacattgataagttcacattgacacaagtaaaatacctaaatgtccccggcggtagttaactacc 43035846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 214
Target Start/End: Original strand, 39864380 - 39864487
Alignment:
Q  107 gaaaattgcttttctgacatctataagttcctaataacacaaataaaatacttaaatggccctagcggtagttaactaccgttgacgtatccggcaatag 206  Q
    ||||||||||| ||| ||||| |||||||| |||| |||||   ||||||   ||||| | | ||| ||||||||||||||||||| |||||| || |||    
T  39864380 gaaaattgcttatctcacatccataagttcataatgacacatgaaaaatatcaaaatgcctccagcagtagttaactaccgttgacatatccgacagtag 39864479  T
Q  207 ttaactac 214  Q
    ||||||||    
T  39864480 ttaactac 39864487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 107 - 189
Target Start/End: Complemental strand, 40729987 - 40729905
Alignment:
Q  107 gaaaattgcttttctgacatctataagttcctaataacacaaataaaatacttaaatggccctagcggtagttaactaccgtt 189  Q
    ||||||||||||||||||||  | || |||  ||| |||||| ||||||||||||||| | | ||||||| ||||||||||||    
T  40729987 gaaaattgcttttctgacattgaaaacttcacaatgacacaagtaaaatacttaaatgccaccagcggtatttaactaccgtt 40729905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 191
Target Start/End: Complemental strand, 49527537 - 49527455
Alignment:
Q  109 aaattgcttttctgacatctataagttcctaataacacaaataaaatacttaaatggccctagcggtagttaactaccgttga 191  Q
    ||||||||||||||||||| |||| ||||||||||||||   |||||||  || || |||| || | ||||||||||||||||    
T  49527537 aaattgcttttctgacatcaataacttcctaataacacatcgaaaatacaaaattgcccctggcagcagttaactaccgttga 49527455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 187
Target Start/End: Complemental strand, 25283880 - 25283803
Alignment:
Q  110 aattgcttttctgacatctataagttcctaataacacaaataaaatacttaaatggccctagcggtagttaactaccg 187  Q
    |||||||||| | ||||  | |||||| ||||||||||| |||| |||| ||||  ||||||||||||||||||||||    
T  25283880 aattgcttttttaacattcagaagttcttaataacacaagtaaattactaaaatacccctagcggtagttaactaccg 25283803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 219
Target Start/End: Complemental strand, 43123142 - 43123033
Alignment:
Q  110 aattgcttttctgacatctataagttcctaataacacaaataaaatacttaaatggccctagcggtagttaactaccgttgacgtatccggcaatagtta 209  Q
    ||||| ||||||||||| |||||||| ||||| |||||   |||||||  || || | | |||||||||||||||| | || | ||||||||  ||||||    
T  43123142 aattgtttttctgacatttataagtttctaatgacacatgaaaaataccaaattgcctccagcggtagttaactactgctgccatatccggccgtagtta 43123043  T
Q  210 actaccgctg 219  Q
    ||||||||||    
T  43123042 actaccgctg 43123033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 191
Target Start/End: Complemental strand, 47110790 - 47110742
Alignment:
Q  143 acacaaataaaatacttaaatggccctagcggtagttaactaccgttga 191  Q
    |||||| ||||||||| ||||  ||||||||||||||||||||||||||    
T  47110790 acacaagtaaaatactgaaatacccctagcggtagttaactaccgttga 47110742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 189
Target Start/End: Complemental strand, 2333905 - 2333822
Alignment:
Q  106 agaaaattgcttttctgacatctataagttcctaataacacaaataaaatacttaaatggccctagcggtagttaactaccgtt 189  Q
    |||||||||||||||||||||  | || |||  ||| |||||| ||||||||||||||| ||| | |||| |||||| ||||||    
T  2333905 agaaaattgcttttctgacataaaaaacttcacaatgacacaagtaaaatacttaaatgcccccaacggttgttaacaaccgtt 2333822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 192
Target Start/End: Complemental strand, 15502863 - 15502805
Alignment:
Q  134 ttcctaataacacaaataaaatacttaaatggccctagcggtagttaactaccgttgac 192  Q
    |||||| |||||||| ||||||||| ||||  ||| |||||||||||||||||| ||||    
T  15502863 ttcctagtaacacaagtaaaatactaaaataccccaagcggtagttaactaccgctgac 15502805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 189
Target Start/End: Original strand, 22436038 - 22436119
Alignment:
Q  108 aaaattgcttttctgacatctataagttcctaataacacaaataaaatacttaaatggccctagcggtagttaactaccgtt 189  Q
    |||||||||||||||||||  | ||||||| |   |||||| ||||||||||||||| | | ||||| |||||||| |||||    
T  22436038 aaaattgcttttctgacattgaaaagttccaatcgacacaagtaaaatacttaaatgcctccagcggcagttaactgccgtt 22436119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 186
Target Start/End: Original strand, 32430511 - 32430563
Alignment:
Q  134 ttcctaataacacaaataaaatacttaaatggccctagcggtagttaactacc 186  Q
    ||||||| ||||||  | ||||||||||||| ||| |||||||||||||||||    
T  32430511 ttcctaaaaacacatgtgaaatacttaaatgtccccagcggtagttaactacc 32430563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 47110059 - 47110099
Alignment:
Q  145 acaaataaaatacttaaatggccctagcggtagttaactac 185  Q
    |||| ||||||||||||||| | ||||||||||||||||||    
T  47110059 acaagtaaaatacttaaatgtctctagcggtagttaactac 47110099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 185
Target Start/End: Complemental strand, 50826054 - 50825975
Alignment:
Q  106 agaaaattgcttttctgacatctataagtt-cctaataacacaaataaaatacttaaatggccctagcggtagttaactac 185  Q
    ||||||||| |||||| ||||| | ||||| ||||| || |||| ||||||||||||||| | ||| ||||||||||||||    
T  50826054 agaaaattgtttttcttacatcaa-aagttgcctaaaaaaacaagtaaaatacttaaatgtctctaccggtagttaactac 50825975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 111 - 221
Target Start/End: Original strand, 11457343 - 11457453
Alignment:
Q  111 attgcttttctgacatctataagttcctaataacacaaataaaatacttaaatggccctagcggtagttaactaccgttgacgtatccggcaatagttaa 210  Q
    |||||||||||||| || | ||||||||||||| |||   ||||||   || || ||||||||||||||||||||||||||| ||||| |||| ||||||    
T  11457343 attgcttttctgacttcaaaaagttcctaataatacatggaaaataaaaaattgtccctagcggtagttaactaccgttgacatatcccgcaacagttaa 11457442  T
Q  211 ctaccgctgaa 221  Q
    |||||||||||    
T  11457443 ctaccgctgaa 11457453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 107 - 221
Target Start/End: Original strand, 44006395 - 44006508
Alignment:
Q  107 gaaaattgcttttctgacatctataagttcctaataacacaaataaaatacttaaatggccctagcggtagttaactaccgttgacgtatccggcaatag 206  Q
    ||||||||||||||||||||  | || |||  ||| ||| || ||||||||||||||| ||| |||||||||||||||||||| | | | ||||||  ||    
T  44006395 gaaaattgcttttctgacattgaaaatttcacaatgacataagtaaaatacttaaatgcccccagcggtagttaactaccgttca-ggaaccggcagcag 44006493  T
Q  207 ttaactaccgctgaa 221  Q
    |||||||||||||||    
T  44006494 ttaactaccgctgaa 44006508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 189
Target Start/End: Original strand, 30715868 - 30715956
Alignment:
Q  101 aaattagaaaattgcttttctgacatctataagttcctaataacacaaataaaatacttaaatggccctagcggtagttaactaccgtt 189  Q
    ||||||||||||||||||| |||||  |  ||||||||| | |||||| |||||||| |||||  ||| ||||||||||||||||||||    
T  30715868 aaattagaaaattgcttttttgacaaatgaaagttcctattgacacaagtaaaatacataaatacccccagcggtagttaactaccgtt 30715956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 189
Target Start/End: Original strand, 38108769 - 38108854
Alignment:
Q  104 ttagaaaattgcttttctgacatctataagttcctaataacacaaataaaatacttaaatggccctagcggtagttaactaccgtt 189  Q
    |||||||||||||||| |||||   | ||||||||| | |||||| ||||||||||||||  | | ||||||||||||||||||||    
T  38108769 ttagaaaattgcttttttgacaataaaaagttcctattgacacaagtaaaatacttaaatacctccagcggtagttaactaccgtt 38108854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 107 - 191
Target Start/End: Original strand, 44846956 - 44847040
Alignment:
Q  107 gaaaattgcttttctgacatctataagttcctaataacacaaataaaatacttaaatggccctagcggtagttaactaccgttga 191  Q
    ||||||||||||||||||||  | || |||  | |||||||| ||||||||||||||  | | ||||||||||||||||||||||    
T  44846956 gaaaattgcttttctgacattgaaaacttcacattaacacaagtaaaatacttaaatacctccagcggtagttaactaccgttga 44847040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 189
Target Start/End: Complemental strand, 51014355 - 51014273
Alignment:
Q  107 gaaaattgcttttctgacatctataagttcctaataacacaaataaaatacttaaatggccctagcggtagttaactaccgtt 189  Q
    ||||||||||||||||||||  | ||||||| | | |||||| |||||||| |||||| ||| ||||| | |||||| |||||    
T  51014355 gaaaattgcttttctgacattgaaaagttccaattgacacaagtaaaatacctaaatgcccccagcggcaattaactgccgtt 51014273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 30026 - 29954
Alignment:
Q  145 acaaataaaatacttaaatggccctagcggtagttaactaccgttgacgtatccggcaatagttaactaccgct 218  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||| | | |||||| |||||||||||||||    
T  30026 acaagtaaaatacttaaatgcccctagcggtagttaactaccgttga-ggacccggcagtagttaactaccgct 29954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 218
Target Start/End: Complemental strand, 32370 - 32296
Alignment:
Q  143 acacaaataaaatacttaaatggccctagcggtagttaactaccgttgacgtatccggcaatagttaactaccgct 218  Q
    |||||| ||||||||||||||| ||| |||||||||||||||||||||| | | |||||| |||||||||||||||    
T  32370 acacaagtaaaatacttaaatgcccccagcggtagttaactaccgttga-ggacccggcagtagttaactaccgct 32296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 98 - 191
Target Start/End: Complemental strand, 47317873 - 47317780
Alignment:
Q  98 ttcaaattagaaaattgcttttctgacatctataagttcctaataacacaaataaaatacttaaatggccctagcggtagttaactaccgttga 191  Q
    |||| ||| ||||||||||||||||||||  | || ||   ||| |||||| ||||||||||||||| ||| ||||||||||||||||||||||    
T  47317873 ttcatatttgaaaattgcttttctgacattgaaaactttacaatgacacaagtaaaatacttaaatgcccccagcggtagttaactaccgttga 47317780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 107 - 221
Target Start/End: Original strand, 27866812 - 27866925
Alignment:
Q  107 gaaaattgcttttctgacatctataagt-tcctaataacacaaataaaatacttaaatggccctagcggtagttaactaccgttgacgtatccggcaata 205  Q
    |||| |||||||||||| ||| | |||| |||||| ||||||| ||||||| ||||||| ||  |||||||||||||||||||||| | | ||||||  |    
T  27866812 gaaagttgcttttctgaaatcaa-aagtctcctaaaaacacaagtaaaatatttaaatgccctcagcggtagttaactaccgttgaag-acccggcagca 27866909  T
Q  206 gttaactaccgctgaa 221  Q
    ||||||||||||||||    
T  27866910 gttaactaccgctgaa 27866925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 189
Target Start/End: Original strand, 3614408 - 3614463
Alignment:
Q  134 ttcctaataacacaaataaaatacttaaatggccctagcggtagttaactaccgtt 189  Q
    |||||| |||||||| |||||||| |||||| ||| ||||||||||||||||||||    
T  3614408 ttcctattaacacaagtaaaatacgtaaatgcccccagcggtagttaactaccgtt 3614463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 107 - 189
Target Start/End: Complemental strand, 41964865 - 41964783
Alignment:
Q  107 gaaaattgcttttctgacatctataagttcctaataacacaaataaaatacttaaatggccctagcggtagttaactaccgtt 189  Q
    ||||||||||||||||||||  | ||||||| | | ||| || |||| |||||||| | ||| ||||||||||||||||||||    
T  41964865 gaaaattgcttttctgacattgaaaagttccaattgacataagtaaattacttaaacgtccccagcggtagttaactaccgtt 41964783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 189
Target Start/End: Complemental strand, 10555152 - 10555070
Alignment:
Q  107 gaaaattgcttttctgacatctataagttcctaataacacaaataaaatacttaaatggccctagcggtagttaactaccgtt 189  Q
    ||||||||||||||||||||  ||||||||  | | |||||| |||||||| |||||| ||| | ||| ||||||| ||||||    
T  10555152 gaaaattgcttttctgacattgataagttcacattgacacaagtaaaatacctaaatgtccccaacggcagttaacaaccgtt 10555070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 5569382 - 5569325
Alignment:
Q  132 agttcctaataacacaaataaaatacttaaatggccctagcggtagttaactaccgtt 189  Q
    |||||||| | |||||| |||||||| |||||  || |||||||||||||||||||||    
T  5569382 agttcctattgacacaagtaaaatacgtaaatatccttagcggtagttaactaccgtt 5569325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 21166376 - 21166448
Alignment:
Q  110 aattgcttttctgacatctataagttcctaataacacaaataaaatacttaaatggccctagcggtagttaact 183  Q
    ||||||||||||||| || |||  ||||||| ||||||| ||||||||| ||||  ||| ||||||||||||||    
T  21166376 aattgcttttctgacttcaatac-ttcctaaaaacacaagtaaaatactaaaatacccccagcggtagttaact 21166448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 219
Target Start/End: Original strand, 15336393 - 15336505
Alignment:
Q  107 gaaaattgcttttctgacatctataagttcctaataacacaaataaaatacttaaatggccctagcggtagttaactaccgttgacgtatccggcaatag 206  Q
    ||||||||||||||||||||  | || |||  ||||||||||  ||| ||  |||| | ||| |||| ||||||||||||||||   || ||||||| ||    
T  15336393 gaaaattgcttttctgacattgagaacttcacaataacacaagaaaattatgtaaaagccccaagcgatagttaactaccgttgggctaaccggcaacag 15336492  T
Q  207 ttaactaccgctg 219  Q
    |||||| ||||||    
T  15336493 ttaactgccgctg 15336505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 190
Target Start/End: Complemental strand, 21762124 - 21762040
Alignment:
Q  106 agaaaattgcttttctgacatctataagttcctaataacacaaataaaatacttaaatggccctagcggtagttaactaccgttg 190  Q
    ||||||||| |||||||||||  ||||||||  | | ||| || |||||||| |||||| |||||||||||||||||||||||||    
T  21762124 agaaaattgtttttctgacattcataagttcacattgacataagtaaaatacctaaatgtccctagcggtagttaactaccgttg 21762040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 189
Target Start/End: Original strand, 18981486 - 18981565
Alignment:
Q  110 aattgcttttctgacatctataagttcctaataacacaaataaaatacttaaatggccctagcggtagttaactaccgtt 189  Q
    |||||||||| ||||||  | || |||||||  |||||| ||||||||||||||| ||| |||| |||||||||||||||    
T  18981486 aattgcttttttgacataaaaaacttcctaaagacacaagtaaaatacttaaatgtccccagcgatagttaactaccgtt 18981565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 191
Target Start/End: Complemental strand, 37770859 - 37770774
Alignment:
Q  106 agaaaattgcttttctgacatctataagttcctaataacacaaataaaatacttaaatggccctagcggtagttaactaccgttga 191  Q
    |||||||||||||||||||||  ||||||||  | | |||||| |||||||  |||||| || |||  ||||||||||||||||||    
T  37770859 agaaaattgcttttctgacattgataagttcacattgacacaagtaaaatatctaaatgcccttagtagtagttaactaccgttga 37770774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 21761320 - 21761361
Alignment:
Q  150 taaaatacttaaatggccctagcggtagttaactaccgttga 191  Q
    |||||||  |||||| ||||||||||||||||||||||||||    
T  21761320 taaaatatctaaatgcccctagcggtagttaactaccgttga 21761361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 108 - 219
Target Start/End: Complemental strand, 86979 - 86868
Alignment:
Q  108 aaaattgcttttctgacatctataagttcctaataacacaaataaaatacttaaatggccctagcggtagttaactaccgttgacgtatccggcaatagt 207  Q
    |||||| ||||| ||||||| |||||||||||||||||||   |||||||  || || ||  |||||||||||||||||||||   |||||| ||| | |    
T  86979 aaaatttcttttttgacatcaataagttcctaataacacatggaaaatacaaaattgcccacagcggtagttaactaccgttggtatatccgacaacaat 86880  T
Q  208 taactaccgctg 219  Q
    ||||||||||||    
T  86879 taactaccgctg 86868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 147
Target Start/End: Original strand, 62381 - 62423
Alignment:
Q  105 tagaaaattgcttttctgacatctataagttcctaataacaca 147  Q
    ||||||||||||||||| || || |||||||||||||||||||    
T  62381 tagaaaattgcttttctaacttcaataagttcctaataacaca 62423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 106 - 221
Target Start/End: Original strand, 4425877 - 4425991
Alignment:
Q  106 agaaaattgcttttctgacatctataagttcctaataacacaaataaaatacttaaatggccctagcggtagttaactaccgttgacgtatccggcaata 205  Q
    ||||| |||||||||||||||  | || |||  |||||||||| ||||||||||||||| ||| | | ||| |||||||||||||| | | ||| ||| |    
T  4425877 agaaagttgcttttctgacattgaaaacttcacaataacacaagtaaaatacttaaatgcccccaacagtacttaactaccgttga-ggacccgacaaca 4425975  T
Q  206 gttaactaccgctgaa 221  Q
    ||||||||||||||||    
T  4425976 gttaactaccgctgaa 4425991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 189
Target Start/End: Complemental strand, 40614785 - 40614739
Alignment:
Q  143 acacaaataaaatacttaaatggccctagcggtagttaactaccgtt 189  Q
    |||||| ||||||||||||||| ||| ||| ||||||||||||||||    
T  40614785 acacaagtaaaatacttaaatgcccccagcagtagttaactaccgtt 40614739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 37041660 - 37041700
Alignment:
Q  107 gaaaattgcttttctgacatctataagttcctaataacaca 147  Q
    |||||||||||||||||| || | |||||||||||||||||    
T  37041660 gaaaattgcttttctgacttccagaagttcctaataacaca 37041700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1903 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1903
Description:

Target: scaffold1903; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 1201 - 1160
Alignment:
Q  148 aataaaatacttaaatggccctagcggtagttaactaccgtt 189  Q
    |||||||||| |||||| ||||||||||||||||||||||||    
T  1201 aataaaatacgtaaatgcccctagcggtagttaactaccgtt 1160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 219
Target Start/End: Original strand, 106760 - 106873
Alignment:
Q  106 agaaaattgcttttctgacatctataagttcctaataacacaaataaaatacttaaatggccctagcggtagttaactaccgttgacgtatccggcaata 205  Q
    ||||||||||||| ||  |||| |||| |||  ||| ||||||| ||| |||  ||| | |||||||||||||||||||||||||||  | ||| ||| |    
T  106760 agaaaattgctttcctatcatcgataacttcacaatgacacaaaaaaattacccaaaagcccctagcggtagttaactaccgttgacaaagccgacaaca 106859  T
Q  206 gttaactaccgctg 219  Q
    ||||||| ||||||    
T  106860 gttaactgccgctg 106873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 6253669 - 6253584
Alignment:
Q  102 aattagaaaattgcttttctgacatctataagttcctaataacacaaataaaatacttaaatggccctagcggtagttaactaccg 187  Q
    |||| ||||||||||||||| ||||  | || |||  ||| |||||| ||||||||||||||| |||  |||||||||||||||||    
T  6253669 aatttgaaaattgcttttctaacatagaaaacttcacaatgacacaagtaaaatacttaaatgtcccccgcggtagttaactaccg 6253584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 20086271 - 20086227
Alignment:
Q  143 acacaaataaaatacttaaatggccctagcggtagttaactaccg 187  Q
    |||||||||||||||||||||| | | ||||||||||||||||||    
T  20086271 acacaaataaaatacttaaatgcctccagcggtagttaactaccg 20086227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 187
Target Start/End: Original strand, 6253299 - 6253382
Alignment:
Q  104 ttagaaaattgcttttctgacatctataagttcctaataacacaaataaaatacttaaatggccctagcggtagttaactaccg 187  Q
    |||||||||||||||||| ||||  | || |||  ||| |||||| ||||||| ||||||| ||| | ||||||||||||||||    
T  6253299 ttagaaaattgcttttctaacatagaaaacttcacaatgacacaagtaaaataattaaatgcccccaacggtagttaactaccg 6253382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 190
Target Start/End: Complemental strand, 24803798 - 24803711
Alignment:
Q  103 attagaaaattgcttttctgacatctataagttcctaataacacaaataaaatacttaaatggccctagcggtagttaactaccgttg 190  Q
    ||||||||||||||||||| ||||  |||| |||  |||||||||| ||||||||  || |  ||| |||||||||| ||||||||||    
T  24803798 attagaaaattgcttttctcacattcataacttcacaataacacaagtaaaataccaaatttcccccagcggtagttcactaccgttg 24803711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 164
Target Start/End: Original strand, 8316233 - 8316290
Alignment:
Q  107 gaaaattgcttttctgacatctataagttcctaataacacaaataaaatacttaaatg 164  Q
    ||||||||||||||||||||  ||||||||  | | |||||| |||||||||||||||    
T  8316233 gaaaattgcttttctgacattgataagttcacattgacacaagtaaaatacttaaatg 8316290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 189
Target Start/End: Original strand, 20477174 - 20477259
Alignment:
Q  104 ttagaaaattgcttttctgacatctataagttcctaataacacaaataaaatacttaaatggccctagcggtagttaactaccgtt 189  Q
    ||||| |||| ||||||||||||  ||||||||  | | |||||| |||||||| |||||| ||| ||||| ||||||| ||||||    
T  20477174 ttagacaattacttttctgacattgataagttcacattgacacaagtaaaatacctaaatgcccccagcggcagttaacaaccgtt 20477259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 45115270 - 45115318
Alignment:
Q  142 aacacaaataaaatacttaaatggccctagcggtagttaactaccgttg 190  Q
    |||||||||||||||| | ||||   |||||||||||||||||||||||    
T  45115270 aacacaaataaaatacgttaatgcatctagcggtagttaactaccgttg 45115318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 16185399 - 16185346
Alignment:
Q  137 ctaataacacaaataaaatacttaaatggccctagcggtagttaactaccgttg 190  Q
    |||| ||||||||| ||||||| ||||| ||| |||||||||||||||||||||    
T  16185399 ctaaaaacacaaatgaaatactaaaatgtccccagcggtagttaactaccgttg 16185346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 220
Target Start/End: Complemental strand, 33523978 - 33523865
Alignment:
Q  107 gaaaattgcttttctgacatctataagttcctaataacacaaataaaatacttaaatggccctagcggtagttaactaccgttgacgtatccggcaatag 206  Q
    ||||||||||||| ||||||  ||||||||  | | |||||| |||||||| || ||| ||| ||||||||||||| |||||| ||  |  |||||  ||    
T  33523978 gaaaattgcttttatgacattgataagttcacattgacacaagtaaaatacctatatgcccccagcggtagttaacaaccgtttaccaagtcggcagaag 33523879  T
Q  207 ttaactaccgctga 220  Q
    ||||||||||||||    
T  33523878 ttaactaccgctga 33523865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 10862279 - 10862320
Alignment:
Q  106 agaaaattgcttttctgacatctataagttcctaataacaca 147  Q
    |||||||||||||||| ||||| |||||||| ||||||||||    
T  10862279 agaaaattgcttttctaacatccataagttcttaataacaca 10862320  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 186
Target Start/End: Original strand, 5613794 - 5613874
Alignment:
Q  106 agaaaattgcttttctgacatctataagttcctaataacacaaataaaatacttaaatggccctagcggtagttaactacc 186  Q
    |||||||||||||| |||||     ||||||||| | || ||| ||||||||||||||  ||| |||||||||||||||||    
T  5613794 agaaaattgcttttttgacaaaggaaagttcctattgacccaagtaaaatacttaaatacccccagcggtagttaactacc 5613874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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