View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9404_low_20 (Length: 239)
Name: NF9404_low_20
Description: NF9404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9404_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 13233651 - 13233433
Alignment:
| Q |
1 |
atatttagatcctctatgtaaaggagatggtgaaggtgcaatggaattagtatatgaaattatttcctccatatcactcaaaagaggtggtttcattccg |
100 |
Q |
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| T |
13233651 |
atatttagatcctctatgcaaaggagatggtgaaggtgcaatggaattagtatatgaaattatttcctccatatcactcaaaagaggtggtttcattccg |
13233552 |
T |
|
| Q |
101 |
gtacgtgcaaactcagctagcacctcaacaccaacaaaatcacactgatcatactcttgtatcacatcaatgagattctcaattggattctctcctttag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13233551 |
gtacgtgcaaactcagctagcacctcaacaccaacaaaatcacactgatcatactcttgtatcacatcaatgagattctcaattggattctctcctttag |
13233452 |
T |
|
| Q |
201 |
gaacttttcgtcccattcg |
219 |
Q |
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||| ||||||||||||||| |
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| T |
13233451 |
gaatttttcgtcccattcg |
13233433 |
T |
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