View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9404_low_22 (Length: 230)
Name: NF9404_low_22
Description: NF9404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9404_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 8 - 199
Target Start/End: Complemental strand, 52835263 - 52835072
Alignment:
| Q |
8 |
agaagcaaagaaataactacaaaatagaaaagagaatattacagtcgagccttaagtgaaattacagaactaacgaagtaattggtaacttacaaattgg |
107 |
Q |
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| T |
52835263 |
agaaacaaagaaaaaactagaaaatagaaaagagaatattacagtcgagccttaagtgaaattacagaaccaacgaagtaattggtaacttacaaattgg |
52835164 |
T |
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| Q |
108 |
gatgaacatcttctgaagctacgacgaaaacctgaagaaggtgttcaaagagcaaataattgtgcatagtatcagcaacaatttttgctacc |
199 |
Q |
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| T |
52835163 |
gatgaacatcttctgaagctacgacgaaaacctgaagaaggtgttcaaagagcaaataattgtgcatagtatcagcaacaatttttgctacc |
52835072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 42677366 - 42677322
Alignment:
| Q |
148 |
gtgttcaaagagcaaataattgtgcatagtatcagcaacaatttt |
192 |
Q |
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| T |
42677366 |
gtgttcaaaaagcaaataattgtgcatagtatcggcaacaatttt |
42677322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 78 - 199
Target Start/End: Original strand, 48968772 - 48968894
Alignment:
| Q |
78 |
taacgaagt-aattggtaacttacaaattgggatgaacatcttctgaagctacgacgaaaacctgaagaaggtgttcaaagagcaaataattgtgcatag |
176 |
Q |
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||||||||| |||| ||||||||||| ||||||||||| |||||||| ||| || |||||||| || ||||||||||| ||||||||||||||||||| |
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| T |
48968772 |
taacgaagttaattagtaacttacaatcggggatgaacatgttctgaaggtaccacaaaaacctgtagtaggtgttcaaaaagcaaataattgtgcatag |
48968871 |
T |
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| Q |
177 |
tatcagcaacaatttttgctacc |
199 |
Q |
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| T |
48968872 |
tatcagcaacaatttttgctacc |
48968894 |
T |
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