View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9404_low_3 (Length: 368)

Name: NF9404_low_3
Description: NF9404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9404_low_3
NF9404_low_3
[»] chr2 (2 HSPs)
chr2 (18-354)||(28428269-28428605)
chr2 (257-296)||(29661880-29661919)
[»] chr8 (2 HSPs)
chr8 (166-296)||(23398162-23398287)
chr8 (250-312)||(23398063-23398125)
[»] chr6 (6 HSPs)
chr6 (200-310)||(6199080-6199188)
chr6 (280-337)||(8676550-8676607)
chr6 (264-337)||(12243662-12243735)
chr6 (280-338)||(520374-520432)
chr6 (195-227)||(8676724-8676756)
chr6 (252-312)||(18072806-18072866)
[»] chr5 (1 HSPs)
chr5 (203-312)||(40154572-40154681)
[»] chr7 (1 HSPs)
chr7 (258-312)||(34015914-34015968)


Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 354
Target Start/End: Complemental strand, 28428605 - 28428269
Alignment:
Q  18 acccaatttataaaggttttgggtaaaatcgttgtgtttaaactcacttgtttggttgttcttagtccatccaatgtgatgattagattcagtgtttaaa 117  Q
    ||||||||| | |||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||| ||||| ||||    
T  28428605 acccaatttctgaaggttttggataaaatcgttgtgtttaaactcacttatttagttgttcttagtccatccaatgtgatgatcagatttagtgtataaa 28428506  T
Q  118 gcttccttaaagttccaactatatggtattgtttggatcatcgcaaaagatgtgttgattcactagtctagtgtatatatagttgttatgatgtatatac 217  Q
    ||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28428505 gcttcctaaaagtcccaactatatggtattgtttggatcatcacaaaagatgtgttgattcactagtctagtgtatatatagttgttatgatgtatatac 28428406  T
Q  218 tacaaattagttagtagttagttgtataagatggagttcgttagagactaacttgatcagagagtttacttgttagtcatgtaaccctagttagtcaaag 317  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  28428405 tacaaattagttagtagttagttgtataagatgaagttcgttagagactaacttgatcatagggtttacttgttagtcatgtaaccctagttagtcaaag 28428306  T
Q  318 ctttgcattgtgtatataagagattactaaaatacaa 354  Q
    ||||||||||||||||||||||||||||| |||||||    
T  28428305 ctttgcattgtgtatataagagattactagaatacaa 28428269  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 296
Target Start/End: Complemental strand, 29661919 - 29661880
Alignment:
Q  257 gttagagactaacttgatcagagagtttacttgttagtca 296  Q
    |||||||| ||||||||||| |||||||||||||||||||    
T  29661919 gttagagattaacttgatcatagagtttacttgttagtca 29661880  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 166 - 296
Target Start/End: Complemental strand, 23398287 - 23398162
Alignment:
Q  166 gatgtgttgattcactagtctagtgtatatatagttgttatgatgtatatactacaaattagttagtagttagttgtataagatggagttcgttagagac 265  Q
    ||||||||| ||||||| |||||||||||  |     ||||||||||||||||| |||||||| ||||||||||||  ||||||||| || |||||||||    
T  23398287 gatgtgttggttcactaatctagtgtatacgt-----ttatgatgtatatactataaattagtgagtagttagttggttaagatggaattagttagagac 23398193  T
Q  266 taacttgatcagagagtttacttgttagtca 296  Q
    | ||| ||||| || ||||||||||||||||    
T  23398192 ttactagatcatagggtttacttgttagtca 23398162  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 250 - 312
Target Start/End: Complemental strand, 23398125 - 23398063
Alignment:
Q  250 ggagttcgttagagactaacttgatcagagagtttacttgttagtcatgtaaccctagttagt 312  Q
    |||||| |||||||||| ||||||||| ||||||||||||||||||| |||||| || |||||    
T  23398125 ggagttagttagagacttacttgatcatagagtttacttgttagtcaagtaaccataattagt 23398063  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 200 - 310
Target Start/End: Original strand, 6199080 - 6199188
Alignment:
Q  200 ttgttatgatgtatatactacaaattagttagtagttagttgtataagatggagttcgttagagactaacttgatcagagagtttacttgttagtcatgt 299  Q
    ||||||||||||||||| || | ||||||  ||||||||| | ||||||||||||| |||| | ||||||||||||| ||| ||||||||||| ||| ||    
T  6199080 ttgttatgatgtatataatatagattagtaggtagttagtgg-ataagatggagttagttacaaactaacttgatcataga-tttacttgttaatcaagt 6199177  T
Q  300 aaccctagtta 310  Q
    |||| ||||||    
T  6199178 aaccatagtta 6199188  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 280 - 337
Target Start/End: Complemental strand, 8676607 - 8676550
Alignment:
Q  280 agtttacttgttagtcatgtaaccctagttagtcaaagctttgcattgtgtatataag 337  Q
    |||||||||  |||||| |||||| |||||||| ||||||||||||||||||||||||    
T  8676607 agtttactttctagtcaagtaaccatagttagttaaagctttgcattgtgtatataag 8676550  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 337
Target Start/End: Original strand, 12243662 - 12243735
Alignment:
Q  264 actaacttgatcagagagtttacttgttagtcatgtaaccctagttagtcaaagctttgcattgtgtatataag 337  Q
    ||||||||||||| ||  ||||||||||||||| |||||| | |||| | ||||||||||||||| ||||||||    
T  12243662 actaacttgatcataggatttacttgttagtcaagtaaccatggttaattaaagctttgcattgtttatataag 12243735  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 338
Target Start/End: Original strand, 520374 - 520432
Alignment:
Q  280 agtttacttgttagtcatgtaaccctagttagtcaaagctttgcattgtgtatataaga 338  Q
    |||||||||| |||||| |||||| |||||||  |||||||| ||| ||||||||||||    
T  520374 agtttacttgctagtcaagtaaccatagttaggtaaagctttccatcgtgtatataaga 520432  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 8676756 - 8676724
Alignment:
Q  195 tatagttgttatgatgtatatactacaaattag 227  Q
    ||||||||||||||||||||||||| |||||||    
T  8676756 tatagttgttatgatgtatatactataaattag 8676724  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 312
Target Start/End: Original strand, 18072806 - 18072866
Alignment:
Q  252 agttcgttagagactaacttgatcagagagtttacttgttagtcatgtaaccctagttagt 312  Q
    ||||||||||||| ||||| ||| | ||||||||||||||||||  |||||| | ||||||    
T  18072806 agttcgttagagattaactcgatgatagagtttacttgttagtcgagtaaccattgttagt 18072866  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 203 - 312
Target Start/End: Original strand, 40154572 - 40154681
Alignment:
Q  203 ttatgatgtatatactacaaattagttagtagttagttgtataagatggagttcgttagagactaacttgatcagagagtttacttgttagtcatgtaac 302  Q
    ||||||||||||||||| | || | |||||||||||||| |||| |||||||| |||||||| ||||||||| | |   ||||||||||||| | |||||    
T  40154572 ttatgatgtatatactatatatcaattagtagttagttggataatatggagttagttagagattaacttgattatatgatttacttgttagttaagtaac 40154671  T
Q  303 cctagttagt 312  Q
    | || |||||    
T  40154672 cataattagt 40154681  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 312
Target Start/End: Original strand, 34015914 - 34015968
Alignment:
Q  258 ttagagactaacttgatcagagagtttacttgttagtcatgtaaccctagttagt 312  Q
    ||||||| ||||||||||| ||||||||||||| ||||| |||||| ||||||||    
T  34015914 ttagagattaacttgatcatagagtttacttgtcagtcaagtaaccatagttagt 34015968  T

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