View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9404_low_5 (Length: 364)
Name: NF9404_low_5
Description: NF9404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9404_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 169 - 347
Target Start/End: Complemental strand, 2230371 - 2230199
Alignment:
| Q |
169 |
gaattgataccaatatcattaaacatcctctcaatctctaagcatgtgcacaatggttatattcaaactttgacttcaattatacttatacatacatgta |
268 |
Q |
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| T |
2230371 |
gaattgataccaatttcattaaacatcctctcaatctctaagcatgtgcacaatggttatattcaaacttcgacttcaattatac------atacatgta |
2230278 |
T |
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| Q |
269 |
taaattgatattttagtatctatctcataacttcaactatgataacaatgtgtactggtgccaactttggaatggatct |
347 |
Q |
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| T |
2230277 |
taaattgatattttagtatctatctgataacttcaactatgataacaatgtgtactggtgccaactttggaatggatct |
2230199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 34 - 145
Target Start/End: Complemental strand, 2230607 - 2230494
Alignment:
| Q |
34 |
ctaagaactaacgtaagcacaaaatgtttgtttcacgatggatacgaggaacgtg--aatagtccaccctaggaggtgcataaaagagaggacctcgtta |
131 |
Q |
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| T |
2230607 |
ctaagaactaacgtaagcacaaaatgtttgtttcacgatggatacgaggaacgtgtgaatagtccaccctaggaggtgcataaaagagaggacctcgtta |
2230508 |
T |
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| Q |
132 |
agaagaggttagaa |
145 |
Q |
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| T |
2230507 |
agaagaggttagaa |
2230494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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