View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9405_1 (Length: 476)
Name: NF9405_1
Description: NF9405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9405_1 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 22 - 448
Target Start/End: Complemental strand, 42083344 - 42082940
Alignment:
| Q |
22 |
atcatcagtgttagtgagaaaccagataaactctacgtaagtcacaaaaccttatcgtccatgttcatttattaaattttaagatattaattatttgaaa |
121 |
Q |
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||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42083344 |
atcataagtgttggtgagaaaccagataaactctacgtaagtcacaaaaccttatcgtccatgttcatttattaaattttaagatattaattatttgaaa |
42083245 |
T |
|
| Q |
122 |
gctatgtagcaccgatgcttcatattcaagaaagacgtatctggtgtccgacacttgtagttacattcaatttcttccatttttcaaattattatcgttg |
221 |
Q |
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|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
42083244 |
gctatgcagcaccgatgcttcatattaaagaaagacgtatctggtgtccgacacttgtagttacattcaatttcttccatttttcaaattattatcgatg |
42083145 |
T |
|
| Q |
222 |
tcaatgtctcagttgtgtttgttgtatcatctagaactgaatattgttttcttccttttggtggttgtgaaaacaggtggttgagtcattagtacccatt |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42083144 |
tcaatgtctcagttgtgtttgttgtatcatctagaactgaatattgttttcttccttttggtggttgtgaaaacaggt---------------------- |
42083067 |
T |
|
| Q |
322 |
gctgagatgtttatgtatgtcggtacacttagggtgctgacagagggccgtgcatcctactcaatgcagtttgacaggtttgatatggtatctcgaaaca |
421 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42083066 |
gctgagatgtttctgtatgtcggtacacttagggtgctgacagagggccgtgcatcctactcaatgcagtttgacaggtttgatacggtatctcgaaaca |
42082967 |
T |
|
| Q |
422 |
ttcagaatgaaatttccacaaattatt |
448 |
Q |
| |
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||||||||||| || |||||||||||| |
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| T |
42082966 |
ttcagaatgaacttaccacaaattatt |
42082940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 253 - 443
Target Start/End: Complemental strand, 42086611 - 42086427
Alignment:
| Q |
253 |
tagaactgaatattgttttcttccttttggtggttgtgaaaacaggtggttgagtcattagtacccattgctgagatgtttatgtatgtcggtacactta |
352 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||| ||||||| ||||||| | |
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| T |
42086611 |
tagaactgaacattgttttcttccttttggtg------aaaacaggtggttgattcattagtacctcttgctgagatgtttcagtatgtcagtacactaa |
42086518 |
T |
|
| Q |
353 |
gggtgctgacagagggccgtgcatcctactcaatgcagtttgacaggtttgatatggtatctcgaaacattcagaatgaaatttccacaaa |
443 |
Q |
| |
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| | | ||||| |||| |||||||| ||||| ||||| || | || ||||||| ||||| ||| | ||||||||||| || || ||||||| |
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| T |
42086517 |
gagggatgacaaagggtcgtgcatcatactctatgcaattagccatgtttgatgtggtacctcaacacattcagaatcaacttgccacaaa |
42086427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 58 - 228
Target Start/End: Complemental strand, 42086825 - 42086665
Alignment:
| Q |
58 |
gtaagtcacaaaaccttatcgtccatgttcatttattaaattttaagatattaattatttgaaagctatgtagcaccgatgcttcatattcaagaaagac |
157 |
Q |
| |
|
||||||||||||||| | || ||||||| ||| |||||||||| ||| ||| | ||||||||||||||||||| || ||||||||| || ||| |
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| T |
42086825 |
gtaagtcacaaaaccctttc-tccatgtgcatatattaaatttgaaggtatga----tttgaaagctatgtagcac-gacacttcatatt----aatgac |
42086736 |
T |
|
| Q |
158 |
gtatctggtgtccgacacttgtagttacattcaatttcttccatttttcaaattattatcgttgtcaatgt |
228 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||| ||||||||| ||||| |||| | ||||||||| |
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|
| T |
42086735 |
gtatctggtgtccaatacttgtagttacattcaatttcatccatttttaaaattgttattgatgtcaatgt |
42086665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 166 - 217
Target Start/End: Original strand, 22284482 - 22284533
Alignment:
| Q |
166 |
tgtccgacacttgtagttacattcaatttcttccatttttcaaattattatc |
217 |
Q |
| |
|
|||||||||| || |||||||||||| || |||||||||||||||||||||| |
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|
| T |
22284482 |
tgtccgacacatgcagttacattcaaatttttccatttttcaaattattatc |
22284533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 37603961 - 37603915
Alignment:
| Q |
177 |
tgtagttacattcaatttcttccatttttcaaattattatcgttgtc |
223 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
37603961 |
tgtatttacattcaatttcttccatttttcaaattgttatcggtgtc |
37603915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 234
Target Start/End: Complemental strand, 3262086 - 3262022
Alignment:
| Q |
170 |
cgacacttgtagttacattcaatttcttccatttttcaaattattatcgttgtcaatgtctcagt |
234 |
Q |
| |
|
|||||| ||||||||| |||||||||||| ||||| |||||||||| ||||||||| ||||| |
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| T |
3262086 |
cgacacatgtagttactttcaatttcttctattttgaaaattattataaatgtcaatgtgtcagt |
3262022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 6933194 - 6933139
Alignment:
| Q |
179 |
tagttacattcaatttcttccatttttcaaattattatcgttgtcaatgtctcagt |
234 |
Q |
| |
|
||||||| ||||||||||||||||||||||| || ||||| |||| |||| ||||| |
|
|
| T |
6933194 |
tagttactttcaatttcttccatttttcaaaatactatcggtgtcgatgtgtcagt |
6933139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 18626976 - 18626931
Alignment:
| Q |
172 |
acacttgtagttacattcaatttcttccatttttcaaattattatc |
217 |
Q |
| |
|
|||| |||||||| ||||| ||||||||| |||||||||||||||| |
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|
| T |
18626976 |
acacatgtagttatattcagtttcttccagttttcaaattattatc |
18626931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 30922574 - 30922528
Alignment:
| Q |
177 |
tgtagttacattcaatttcttccatttttcaaattattatcgttgtc |
223 |
Q |
| |
|
|||||||||||||||||| || |||||||| |||||||||| ||||| |
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| T |
30922574 |
tgtagttacattcaatttattgcatttttctaattattatcattgtc |
30922528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 8217034 - 8217086
Alignment:
| Q |
177 |
tgtagttacattcaatttcttccatttt-tcaaattattatcgttgtcaatgt |
228 |
Q |
| |
|
||||||||||||||||| |||| ||||| | ||||||||||||||||| |||| |
|
|
| T |
8217034 |
tgtagttacattcaattccttctattttctaaaattattatcgttgtctatgt |
8217086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 19629069 - 19629033
Alignment:
| Q |
181 |
gttacattcaatttcttccatttttcaaattattatc |
217 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||| |
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|
| T |
19629069 |
gttacattcaattacttccatttttcaaagtattatc |
19629033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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