View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9406_high_1 (Length: 875)

Name: NF9406_high_1
Description: NF9406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9406_high_1
NF9406_high_1
[»] chr3 (6 HSPs)
chr3 (1-728)||(24571496-24572226)
chr3 (761-875)||(24570987-24571101)
chr3 (383-449)||(12032573-12032639)
chr3 (82-165)||(28308500-28308585)
chr3 (734-767)||(24571121-24571154)
chr3 (306-367)||(28308707-28308768)
[»] chr7 (4 HSPs)
chr7 (251-470)||(27601663-27601886)
chr7 (406-474)||(2820461-2820529)
chr7 (243-315)||(2820570-2820642)
chr7 (82-143)||(2820736-2820799)
[»] chr1 (2 HSPs)
chr1 (115-169)||(22191821-22191875)
chr1 (115-169)||(3073802-3073856)
[»] chr6 (1 HSPs)
chr6 (106-164)||(28576494-28576552)
[»] chr2 (2 HSPs)
chr2 (394-447)||(13506527-13506580)
chr2 (133-174)||(32191525-32191566)


Alignment Details
Target: chr3 (Bit Score: 545; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 1 - 728
Target Start/End: Complemental strand, 24572226 - 24571496
Alignment:
Q  1 gaaagaaatgttgagcagtctcgataccgccacacccagacacgcaatgctgagcctcgagagatataatgtcgcactccgccaaattatcttttgatgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24572226 gaaagaaatgttgagcagtctcgataccgccacacccagacacgcaatgttgagcctcgagagatataatgtcgcactccgccaaattatcttttgatgg 24572127  T
Q  101 caaccttccgaataagtctccaaacaaaattagaaaccttcaaaggaacatgtttgtgccaaattaaatatgtagtaacgtcatggatgtgtgtctctta 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  24572126 caaccttccgaataagtctccaaacaaaaatagaaaccttcaaagaaacatgtttgtgccacattaaatctgtagtaacgtcatggatgtgtgtctctta 24572027  T
Q  201 agtagtaagcaactgatacacgccacatatcgagtaaccactaccaccactaggatcaatcctccactgccaatggtctgaaaaatcatgttacagagaa 300  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  24572026 agtagtaagcaactgatacacgccacatatcaagtaaccaccaccaccactaggatcaatcctccactgccaatggtctgaaaaatcatgttgcagagaa 24571927  T
Q  301 acgtcatgaaataaaatcctacaatccctaaacatctcctcctcccacgtccacaacctatgccgcctgccaacctacccaaccatcctcccaacccaaa 400  Q
    | ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  24571926 atgtcatgaaataaaatcctacactccctaaacatctcctcctcccacgcccacaacctacgccgcatgccaacctacccaaccatcctcccaacccaaa 24571827  T
Q  401 acacacatcaccgccaccgtaatcgacttattctccaccaaatcaaacagacacctaaatctcctacacaaaggttgacctcccaaccacatattcattc 500  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||| |    
T  24571826 acacacatcaccgccaccataatcgacttattctccaacaaatcaaagagacacctaaatctcctacacaaaggttgacctcccaaccacagatccatcc 24571727  T
Q  501 nnnnnnnggtatccctcccattacgaaccttccttccaatatcct------gtgaattctacatctacatattggttatcaaatattgataacccgcgaa 594  Q
           |||||||||||||||||||||||||||||||||||| |      ||  |||||||||||||||||||||||||||||||||||||||||||||    
T  24571726 aaaaaaaggtatccctcccattacgaaccttccttccaatatctttcagaggtagattctacatctacatattggttatcaaatattgataacccgcgaa 24571627  T
Q  595 cacatagacctaataataatctaacatcttctagggttaatgttgtagattcacctgttgaaagnnnnnnnnngtgtgggtttcgaggtctccaccttta 694  Q
    |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||| ||||         |||||||||||||||||| || |||||    
T  24571626 cacatagacctaataataatctaacatcttctagggtta---ttgtagattcacctgttaaaagaaaaaaaaagtgtgggtttcgaggtcttcagcttta 24571530  T
Q  695 agtaaggcaataattaaatcatgagtgtttgcat 728  Q
    ||||||||||||||||||||| ||||||||||||    
T  24571529 agtaaggcaataattaaatcacgagtgtttgcat 24571496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 761 - 875
Target Start/End: Complemental strand, 24571101 - 24570987
Alignment:
Q  761 accaagtgtgtggaaaagtgccttatgtaaaattgcattgtattgttggtgtgtcttgtgaagtgcctcttgacaatgtttcttgagaagtaaaggaata 860  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24571101 accaagtgtgtggaaaagtgccttatgtaaaattgcattgtattgttggtgtgtcttgtgaagtgcctcttgacaatgtttcttgagaagtaaaggaata 24571002  T
Q  861 agtgtcaagtgtgag 875  Q
    |||||||| ||||||    
T  24571001 agtgtcaaatgtgag 24570987  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 383 - 449
Target Start/End: Complemental strand, 12032639 - 12032573
Alignment:
Q  383 ccatcctcccaacccaaaacacacatcaccgccaccgtaatcgacttattctccaccaaatcaaaca 449  Q
    |||||||||||||||||| ||||||||||| | |||||||||||||||||| || | ||||||||||    
T  12032639 ccatcctcccaacccaaatcacacatcaccacaaccgtaatcgacttattccccgcaaaatcaaaca 12032573  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 165
Target Start/End: Original strand, 28308500 - 28308585
Alignment:
Q  82 ccaaattatcttttgatggcaacct--tccgaataagtctccaaacaaaattagaaaccttcaaaggaacatgtttgtgccaaatt 165  Q
    |||||||||| |||||  |||||||  |||||| |||||| ||| ||| | ||||||||||||| ||||| || ||||||||||||    
T  28308500 ccaaattatcctttgacagcaacctattccgaagaagtcttcaagcaagaatagaaaccttcaagggaacctgcttgtgccaaatt 28308585  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 734 - 767
Target Start/End: Complemental strand, 24571154 - 24571121
Alignment:
Q  734 ctaagagagcatagtaccacattctccaccaagt 767  Q
    |||||||||||||||||||||||||||| |||||    
T  24571154 ctaagagagcatagtaccacattctccatcaagt 24571121  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 306 - 367
Target Start/End: Original strand, 28308707 - 28308768
Alignment:
Q  306 atgaaataaaatcctacaatccctaaacatctcctcctcccacgtccacaacctatgccgcc 367  Q
    ||||| |||||| ||||| ||||  || |||||||||||||||| |||||||||| ||||||    
T  28308707 atgaagtaaaattctacactcccctaagatctcctcctcccacgcccacaacctacgccgcc 28308768  T

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Target: chr7 (Bit Score: 45; Significance: 4e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 251 - 470
Target Start/End: Complemental strand, 27601886 - 27601663
Alignment:
Q  251 taggatcaatcctccactgccaatggtctgaaaaatcatgttacagagaaacgtcatgaaataaaatcctacaatccctaaacatctcctcctcccacgt 350  Q
    ||||||||  |||||| | |||||| |||| | ||| ||| | ||||||||  | ||||| ||||||| |||| ||||  ||| |||||||||||||||     
T  27601886 taggatcagacctccattaccaatgatctgtacaattatgctgcagagaaaaattatgaagtaaaatcttacactcccctaacttctcctcctcccacgc 27601787  T
Q  351 ccacaacctatgccgcc--tgccaacc-tacccaaccatcctccc-aacccaaaacacacatcaccgccaccgtaatcgacttattctccaccaaatcaa 446  Q
    |||||||||| ||||||  |||||| | | |||  ||  |||||| |||||||| | | |||||||||||| ||||| |||||||||||  |||||| ||    
T  27601786 ccacaacctacgccgccactgccaagcatccccgtcccccctccccaacccaaatcgctcatcaccgccactgtaatggacttattctctgccaaattaa 27601687  T
Q  447 acagacacctaaatctcctacaca 470  Q
    ||| || |||||| ||||||||||    
T  27601686 acaaacgcctaaacctcctacaca 27601663  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 406 - 474
Target Start/End: Complemental strand, 2820529 - 2820461
Alignment:
Q  406 catcaccgccaccgtaatcgacttattctccaccaaatcaaacagacacctaaatctcctacacaaagg 474  Q
    ||||||||| || |||| | ||||||||||  ||||||| |||| ||||||||| ||||||||||||||    
T  2820529 catcaccgcaactgtaaccaacttattctcttccaaatctaacaaacacctaaacctcctacacaaagg 2820461  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 243 - 315
Target Start/End: Complemental strand, 2820642 - 2820570
Alignment:
Q  243 accaccactaggatcaatcctccactgccaatggtctgaaaaatcatgttacagagaaacgtcatgaaataaa 315  Q
    ||||||||||||| || || |||||| ||||||||||| ||||| ||| | || ||||| |||||||||||||    
T  2820642 accaccactaggagcagtcttccactaccaatggtctgtaaaattatgctgcaaagaaatgtcatgaaataaa 2820570  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 143
Target Start/End: Complemental strand, 2820799 - 2820736
Alignment:
Q  82 ccaaattatcttttgatggcaacc--ttccgaataagtctccaaacaaaattagaaaccttcaa 143  Q
    |||||||||| |||||||||||||  || |||| |||||| ||||||||| |||||||||||||    
T  2820799 ccaaattatcctttgatggcaaccaatttcgaagaagtcttcaaacaaaaatagaaaccttcaa 2820736  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 169
Target Start/End: Complemental strand, 22191875 - 22191821
Alignment:
Q  115 agtctccaaacaaaattagaaaccttcaaaggaacatgtttgtgccaaattaaat 169  Q
    ||||||||| ||| | ||||||||||||||||||| ||||| |||||||||||||    
T  22191875 agtctccaagcaagaatagaaaccttcaaaggaacctgtttatgccaaattaaat 22191821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 3073802 - 3073856
Alignment:
Q  115 agtctccaaacaaaattagaaaccttcaaaggaacatgtttgtgccaaattaaat 169  Q
    ||||||||  ||||| |||| |||||||| ||||| |||||||||||||||||||    
T  3073802 agtctccacgcaaaaatagagaccttcaagggaacctgtttgtgccaaattaaat 3073856  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 164
Target Start/End: Complemental strand, 28576552 - 28576494
Alignment:
Q  106 ttccgaataagtctccaaacaaaattagaaaccttcaaaggaacatgtttgtgccaaat 164  Q
    ||||||| |||||||||||||||| ||||||||||||  || || ||||| ||||||||    
T  28576552 ttccgaaaaagtctccaaacaaaaatagaaaccttcaggggtacctgtttatgccaaat 28576494  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 394 - 447
Target Start/End: Complemental strand, 13506580 - 13506527
Alignment:
Q  394 acccaaaacacacatcaccgccaccgtaatcgacttattctccaccaaatcaaa 447  Q
    ||||||| ||||||||||  ||||||||||||| ||||||||| | ||||||||    
T  13506580 acccaaatcacacatcacaaccaccgtaatcgatttattctccgctaaatcaaa 13506527  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 32191525 - 32191566
Alignment:
Q  133 gaaaccttcaaaggaacatgtttgtgccaaattaaatatgta 174  Q
    ||||||||||| ||||| ||||| ||||||||||||||||||    
T  32191525 gaaaccttcaagggaacctgtttatgccaaattaaatatgta 32191566  T

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