View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9406_high_12 (Length: 252)
Name: NF9406_high_12
Description: NF9406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9406_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 37792489 - 37792722
Alignment:
| Q |
1 |
catctacgcttgttatgatgatcaaatgatttatatagtgcagatggaccgtgattgcttcaaattttccagggagaaccgataatgagataaagaatca |
100 |
Q |
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| T |
37792489 |
catctacgctttttatgatgatcaaatgatttatatagtgcagatggaccgtgattgcttcaaattttccagggagaaccgataatgagataaagaatca |
37792588 |
T |
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| Q |
101 |
ctggcacactaccttgaagaagcgttttgtaaagaatatcaagtctaaacgtggaacgagaatagcaaaagattcaaattcaaataatcaccctacattg |
200 |
Q |
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| T |
37792589 |
ctggcacactaccttgaagaagcgttttgtaaagaatatcaagtcgaaacgtggaacgagaatagcaaaagattcaaattcaaataatcaccctacattg |
37792688 |
T |
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| Q |
201 |
gaagaacctaagaaatttgaaggagttttagaga |
234 |
Q |
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| T |
37792689 |
gaagaacctaagaaatttgaagtagttttagaga |
37792722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 37809094 - 37809322
Alignment:
| Q |
15 |
atgatgatcaaatgatttatata----gtgcagatggaccgtgattgcttcaaattttccagggagaaccgataatgagataaagaatcactggcacact |
110 |
Q |
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| T |
37809094 |
atgataatcaaatgatttatattaattgtgcagatggaccatgatttctgcaaatttaccagggagaacagataacgagataaagaactactggcacacc |
37809193 |
T |
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| Q |
111 |
accttgaagaagcgttttgtaaagaata--tc-aagtctaaacgtggaacgagaatagcaaaagattcaaattcaaataatcaccctacattggaagaac |
207 |
Q |
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| T |
37809194 |
accataaaaaagactcttgtaaagaataagtcaaacaccaaacgtggaacgaaaaaagccaaagactcaaattcaaaaaatcaccctacaatggaaaaac |
37809293 |
T |
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| Q |
208 |
ctaagaaatttgaaggagttttagagaac |
236 |
Q |
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| T |
37809294 |
ccaagaaacttggagaaatgttagagaac |
37809322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 37793173 - 37793225
Alignment:
| Q |
184 |
ataatcaccctacattggaagaacctaagaaatttgaaggagttttagagaac |
236 |
Q |
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|||| |||||||||||||||||| | || |||||||||||||||||||||||| |
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| T |
37793173 |
ataagcaccctacattggaagaagccaataaatttgaaggagttttagagaac |
37793225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 37792909 - 37792961
Alignment:
| Q |
184 |
ataatcaccctacattggaagaacctaagaaatttgaaggagttttagagaac |
236 |
Q |
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| T |
37792909 |
ataatcaccctacaatggaagaaaccaagaaacttgaaggagtttttgagaac |
37792961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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