View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9406_high_17 (Length: 205)

Name: NF9406_high_17
Description: NF9406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9406_high_17
NF9406_high_17
[»] chr8 (2 HSPs)
chr8 (17-185)||(30837726-30837894)
chr8 (96-178)||(16054765-16054847)
[»] scaffold0010 (1 HSPs)
scaffold0010 (96-185)||(235700-235790)
[»] chr3 (1 HSPs)
chr3 (96-185)||(25226639-25226729)
[»] chr4 (2 HSPs)
chr4 (113-185)||(27655837-27655910)
chr4 (113-185)||(9003241-9003314)
[»] chr6 (1 HSPs)
chr6 (123-185)||(28524084-28524147)
[»] chr1 (2 HSPs)
chr1 (110-178)||(18235787-18235856)
chr1 (96-140)||(28538541-28538585)
[»] chr7 (1 HSPs)
chr7 (96-171)||(22384181-22384257)
[»] chr5 (1 HSPs)
chr5 (96-138)||(16988354-16988396)


Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 30837726 - 30837894
Alignment:
Q  17 aggcgaatttcaattttactaaggatcatatctgaaaaagcgaattttactaaggcaggagatttacatattttaatttttgtgctaaaagatcacgagt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30837726 aggcgaatttcaattttactaaggatcatatctgaaaaagcgaattttactaaggcagtagatttacatattttaatttttgtgctaaaagatcacgagt 30837825  T
Q  117 atgaatctttgaaatgtgaaccaagtggttttaaactagatccatgctccaaagtctacacttgacact 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30837826 atgaatctttgaaatgtgaaccaagtggttttaaactagatccatgctccaaagtctacacttgacact 30837894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 96 - 178
Target Start/End: Complemental strand, 16054847 - 16054765
Alignment:
Q  96 ttgtgctaaaagatcacgagtatgaatctttgaaatgtgaaccaagtggttttaaactagatccatgctccaaagtctacact 178  Q
    |||||| |||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||    
T  16054847 ttgtgcaaaaagaacacgagtatggatctttgaaatgtgaaccaagtggttataaactagatccatgccctaaagtctacact 16054765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 96 - 185
Target Start/End: Complemental strand, 235790 - 235700
Alignment:
Q  96 ttgtgctaaaagatcacgagtatgaatctttgaaatgtgaaccaagtggttttaaacta-gatccatgctccaaagtctacacttgacact 185  Q
    |||||| |||||| || |||||||||||||||||||||||| ||||||  ||||||||| ||||||||||||| ||||||| || ||||||    
T  235790 ttgtgcaaaaagaacatgagtatgaatctttgaaatgtgaatcaagtgactttaaactaggatccatgctccatagtctacgctcgacact 235700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 96 - 185
Target Start/End: Original strand, 25226639 - 25226729
Alignment:
Q  96 ttgtgctaaaagatcacgagtatgaatctttgaaatgtgaaccaagtggttttaaacta-gatccatgctccaaagtctacacttgacact 185  Q
    |||||| |||||| ||||||||||||||||||||||||||| ||||||  | ||||  | |||||||||| |||| |||||||| ||||||    
T  25226639 ttgtgcaaaaagaacacgagtatgaatctttgaaatgtgaatcaagtgagtctaaatgaggatccatgcttcaaaatctacactcgacact 25226729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 185
Target Start/End: Complemental strand, 27655910 - 27655837
Alignment:
Q  113 gagtatgaatctttgaaatgtgaaccaagtggttttaaacta-gatccatgctccaaagtctacacttgacact 185  Q
    ||||||| |||||||||||||||||||||||| | || |||| | ||| |||||||||||||||||| ||||||    
T  27655910 gagtatggatctttgaaatgtgaaccaagtggctctacactaggttccgtgctccaaagtctacactcgacact 27655837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 185
Target Start/End: Original strand, 9003241 - 9003314
Alignment:
Q  113 gagtatgaatctttgaaatgtgaaccaagtggttttaaactag-atccatgctccaaagtctacacttgacact 185  Q
    |||||| ||||||||||||||||| ||||||||| |||  ||| ||| ||||||||||||| ||||| ||||||    
T  9003241 gagtataaatctttgaaatgtgaatcaagtggttctaatttagaatctatgctccaaagtcaacactcgacact 9003314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 185
Target Start/End: Complemental strand, 28524147 - 28524084
Alignment:
Q  123 ctttgaaatgtgaaccaagtggttttaaactag-atccatgctccaaagtctacacttgacact 185  Q
    |||||||||||||| ||||||| | |||||||| ||||||||||||||||||||| | ||||||    
T  28524147 ctttgaaatgtgaatcaagtggctctaaactaggatccatgctccaaagtctacattcgacact 28524084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 178
Target Start/End: Complemental strand, 18235856 - 18235787
Alignment:
Q  110 cacgagtatgaatctttgaaatgtgaaccaagtggttttaaactag-atccatgctccaaagtctacact 178  Q
    |||||||||| ||||||||||||||||||||  || | |||||||| || |||| |||||||||||||||    
T  18235856 cacgagtatggatctttgaaatgtgaaccaatcggctctaaactagtattcatgatccaaagtctacact 18235787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 28538541 - 28538585
Alignment:
Q  96 ttgtgctaaaagatcacgagtatgaatctttgaaatgtgaaccaa 140  Q
    |||||||| |||| ||| |||||||||||||||||||||||||||    
T  28538541 ttgtgctagaagaacacaagtatgaatctttgaaatgtgaaccaa 28538585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 171
Target Start/End: Complemental strand, 22384257 - 22384181
Alignment:
Q  96 ttgtgctaaaagatcacgagtatgaatctttgaaatgtgaaccaagtggttttaaactag-atccatgctccaaagt 171  Q
    |||||| |||||| || |||||||| ||||| ||||||||| ||||||||| |||  ||| ||||||||||||||||    
T  22384257 ttgtgcaaaaagaacatgagtatgagtctttaaaatgtgaatcaagtggttctaatataggatccatgctccaaagt 22384181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 138
Target Start/End: Original strand, 16988354 - 16988396
Alignment:
Q  96 ttgtgctaaaagatcacgagtatgaatctttgaaatgtgaacc 138  Q
    |||||| |||||| |||||||||| ||||||||||||||||||    
T  16988354 ttgtgcaaaaagaacacgagtatggatctttgaaatgtgaacc 16988396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University