View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9406_high_3 (Length: 512)
Name: NF9406_high_3
Description: NF9406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9406_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 442; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 19 - 505
Target Start/End: Original strand, 23877659 - 23878145
Alignment:
| Q |
19 |
acaatgccacttcaacgtgaattttatgaagctagaaattcttgcttcagcctagacattgttgacggcctgtccaccgcaattttaaacactgcattag |
118 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||| |
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| T |
23877659 |
acaatgccactttaacgtgaattttatgaagctagaaattcttgcttcagcctagacatcgttgatggcctgtccaccgcaattttgaacactgcattag |
23877758 |
T |
|
| Q |
119 |
gaggatgtttattaggattactgtgctactaaagttttttaattaaaatacaaaaaagtatatagaatagaaaaggtgatgatatagctgaagtgataaa |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23877759 |
gaggatgtttattaggattactgtgctactaaagttttttaattaaaatacaaaaaagtatatagaatagaaaaggtgatgatatagctgaagtgataaa |
23877858 |
T |
|
| Q |
219 |
attccaatccgttcaatgacaccaaaaggagggaagaagccattagtttttaacattttaagatcttaatattatgataggaatttagtacaagagattt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23877859 |
attccaatccgttcaatgacaccaaaaggagggaagaagccattagtttttaacattttaagatcttaatattatgataggaatttagtacaagagattt |
23877958 |
T |
|
| Q |
319 |
atactttaaagtccatttgccaatgtgcactagttaacatttttgaaaaagcttgagacctatttctcctaagttgagtttgataaaccagaaaattgac |
418 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
23877959 |
atactttaaagtccatttgccaatgtgcactagttaacatttttgaaaaagcttgagacctatttctcctaagctgagtttgataaaccagaaaattgac |
23878058 |
T |
|
| Q |
419 |
tatgtatagaactttaccacaattataaaactgtagtttaattccaagtttgctgtaaatattnnnnnnnttgctgcagaataatct |
505 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
23878059 |
tatgtatagaactttaccacaattataaaactgtagtttaattccaagtttgctgtaaatagtaaaaaaattgctgcagaataatct |
23878145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 389
Target Start/End: Complemental strand, 23421472 - 23421104
Alignment:
| Q |
19 |
acaatgccacttcaacgtgaattttatgaagctagaaattcttgcttcagcctagacattgttgacggcctgtccaccgcaattttaaacactgcattag |
118 |
Q |
| |
|
|||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||| |
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|
| T |
23421472 |
acaatgccacttcaacgtgacttt-acaaagctagaaattcttgcttcagcctagacatcattgatggcctgtccaccgcaattctaaacactgcattag |
23421374 |
T |
|
| Q |
119 |
gaggatgtttattaggattactgtgctactaaagttttttaattaaaatacaaaaaagtatatagaatagaaaaggtgatgatatagctgaagtgataaa |
218 |
Q |
| |
|
||||||| |||||||||||| ||||| |||||||||||| | |||||||||||||||||||||||||| |||||| || |||||||||| || ||| ||| |
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| T |
23421373 |
gaggatggttattaggattattgtgccactaaagtttttca-ttaaaatacaaaaaagtatatagaatcgaaaagttgctgatatagcttaattgaaaaa |
23421275 |
T |
|
| Q |
219 |
attccaatccgttcaatgacaccaaaaggagggaagaagccattagtttttaacattttaagatcttaatattatgataggaatttagtacaagagattt |
318 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
23421274 |
attccaatccattcaatgacaccaaaaggagagaagaagccattagtttttagcattttaagatcttaatattatgataggaatttagtagaagagattt |
23421175 |
T |
|
| Q |
319 |
atactttaaagtccatttgccaatgtgcactagttaacatttttgaaaaagcttgagacctatttctccta |
389 |
Q |
| |
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|||| ||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||| |
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|
| T |
23421174 |
ataccttaaagttcatttgccaatgtgtactagtttacatttttgaaaaagcttgagacctgtttctccta |
23421104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 328
Target Start/End: Complemental strand, 23423173 - 23423117
Alignment:
| Q |
272 |
cattttaagatcttaatattatgataggaatttagtacaagagatttatactttaaa |
328 |
Q |
| |
|
||||| ||||| ||||||||||||||| ||||||||| | ||||||||||||||||| |
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|
| T |
23423173 |
catttcaagattttaatattatgatagtaatttagtaaatgagatttatactttaaa |
23423117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 328
Target Start/End: Original strand, 23875780 - 23875836
Alignment:
| Q |
272 |
cattttaagatcttaatattatgataggaatttagtacaagagatttatactttaaa |
328 |
Q |
| |
|
||||| ||||| ||||||||||||||| ||||||||| | ||||||||||||||||| |
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|
| T |
23875780 |
catttcaagattttaatattatgatagtaatttagtaaatgagatttatactttaaa |
23875836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 115 - 208
Target Start/End: Original strand, 37943455 - 37943548
Alignment:
| Q |
115 |
ttaggaggatgtttattaggattactgtgctactaaagttttttaattaaaatacaaaaaagtatatagaatagaaaaggtgatgatatagctg |
208 |
Q |
| |
|
|||||| |||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||| |
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|
| T |
37943455 |
ttaggaagatgattattaggattaatgtgctactaaagttttcacattaaaatacaaaaaagtatatgaaatagaaaagttgatgatatagctg |
37943548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 398 - 442
Target Start/End: Complemental strand, 21371911 - 21371867
Alignment:
| Q |
398 |
ttgataaaccagaaaattgactatgtatagaactttaccacaatt |
442 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
21371911 |
ttgaaaaaccagaatattgactatgtatagaactttaccacaatt |
21371867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 398 - 442
Target Start/End: Original strand, 11766077 - 11766121
Alignment:
| Q |
398 |
ttgataaaccagaaaattgactatgtatagaactttaccacaatt |
442 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
11766077 |
ttgaaaaaccagaatattgactatgtatagaactttaccacaatt |
11766121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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