View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9406_high_5 (Length: 422)
Name: NF9406_high_5
Description: NF9406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9406_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 19 - 391
Target Start/End: Original strand, 54473077 - 54473451
Alignment:
| Q |
19 |
agacaacatgattttcttttttgaaccagttacacagcttcactctcacctgtgtaagataatttgcttgcataagaggattttgcatctcttgtacgat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54473077 |
agacaacatgattttcttttttgaaccagttacacagcttcactctcacctgtgtaagataatttgcttgcataagaggattttgcatctcttgtacgat |
54473176 |
T |
|
| Q |
119 |
gatgatttgcttaatgctgtatggacgccacattatcatgattcatatcagtataaaaaagtttttagggataataaatgtcctgcaattttgttacttt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54473177 |
gatgatttgcttaatgctgtatggacgccacattatcatgattcatatcagtataaaaaagtttttagggataataaatgtcctgcaattttgttacttt |
54473276 |
T |
|
| Q |
219 |
gagtttgagtacgagagtcaaatcatttgattcttgaatgttatcttatggatgccgacgtatctctgcaaagggtaactgctacatatttgaaa--cta |
316 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
54473277 |
gagtttgagtacgagagtctagtcatttgattcttgaattttatcttatggatgccgatgtatctctgcaaagggtaactgctacatatttgaaactcta |
54473376 |
T |
|
| Q |
317 |
attcactaggtgtgtgtttggtttttctagaaaccacatcaacaacccatgtttaaaccacaattggttgcttca |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
54473377 |
attcactaggtgtgtgtttggtttttctagaaaccacatcaacaacccatgcttaagccacaattggttgcttca |
54473451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University