View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9406_high_9 (Length: 342)
Name: NF9406_high_9
Description: NF9406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9406_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 21 - 334
Target Start/End: Complemental strand, 13013212 - 13012899
Alignment:
| Q |
21 |
gttgtgtcactaaaggtgcaattcttcacatttatgttgtcaacatcttcttctccatcattctttccaagacttccaatactaactccatgtccaggac |
120 |
Q |
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| T |
13013212 |
gttgtgtcactaaatgtgcaattcttcacatttatgttgtcaacatcttcttctccatcattctttccaagacttccaatactaactccatgtccaggac |
13013113 |
T |
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| Q |
121 |
cacaagaaacgtcagagatccaaacattcctagtaccagatatcattgcaatgcaatcatcaccggtgccgatgttcgcacttttaatagttatcccgtt |
220 |
Q |
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| T |
13013112 |
cacaaaaaacgtcagagatccaaacattcctagtaccagagaccattgcaatacaatcatcaccggtgccgatgctcgcacttttaatagttatcccgtt |
13013013 |
T |
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| Q |
221 |
tgatttgcctatttttattccatctgtgtttgggctatcacccggggcggaaattctgannnnnnngaaaatcatgttttcacaagcaaacaacttaaaa |
320 |
Q |
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| T |
13013012 |
tgatttgcctatttttattccatctgtgtttgggctatcacccggggcggaaattctgatttttgtgaaaatcatgttttcacaagcaaacaacttaaaa |
13012913 |
T |
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| Q |
321 |
tgtgctcctttgct |
334 |
Q |
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| T |
13012912 |
tgtgctcctttgct |
13012899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 22 - 259
Target Start/End: Complemental strand, 11532539 - 11532302
Alignment:
| Q |
22 |
ttgtgtcactaaaggtgcaattcttcacatttatgttgtcaacatcttcttctccatcattctttccaagacttccaatactaactccatgtccaggacc |
121 |
Q |
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| T |
11532539 |
ttgtgccattaaaggtacaattcttaacaacaatgtcatcaatatcttcttcaccttcattcccaccaagacttccgacactaattccatgaccaggacc |
11532440 |
T |
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| Q |
122 |
acaagaaacgtcagagatccaaacattcctagtaccagatatcattgcaatgcaatcatcaccggtgccgatgttcgcacttttaatagttatcccgttt |
221 |
Q |
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| T |
11532439 |
acaaaaaacatctgaaattcgaacattcctagtacctgagagcatagcaatgcaatcatcgccggttccaatgttcacacttgaaatatttattcccttt |
11532340 |
T |
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| Q |
222 |
gatttgcctatttttattccatctgtgtttgggctatc |
259 |
Q |
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| T |
11532339 |
gacatccctattttaataccatctgtgttggggctatc |
11532302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 184
Target Start/End: Original strand, 49617350 - 49617495
Alignment:
| Q |
36 |
gtgcaattcttcacatttatgttgtcaacatcttcttctccatcattctttccaagacttccaatactaactccatgtccaggaccacaagaaacgtcag |
135 |
Q |
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| T |
49617350 |
gtgcaattcctcatatctatgttttcaacatcttcc---ccatcattcttaccaaggctttcaacaccgattccatgaccaagaccacaaagaacatatg |
49617446 |
T |
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| Q |
136 |
agatccaaacattcctagtaccagatatcattgcaatgcaatcatcacc |
184 |
Q |
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| T |
49617447 |
aaatccaaacattcttagtactagagatcatagcaatgcagtcatcacc |
49617495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 138 - 213
Target Start/End: Complemental strand, 49616806 - 49616731
Alignment:
| Q |
138 |
atccaaacattcctagtaccagatatcattgcaatgcaatcatcaccggtgccgatgttcgcacttttaatagtta |
213 |
Q |
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||||| ||||||| ||||||||| ||||| ||||||||||||||||| || | |||||| ||||| | ||||||| |
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| T |
49616806 |
atccatacattcccagtaccagagatcatagcaatgcaatcatcaccagttgcaatgttcacacttgtgatagtta |
49616731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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