View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9406_low_13 (Length: 398)
Name: NF9406_low_13
Description: NF9406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9406_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 42248350 - 42247957
Alignment:
| Q |
1 |
tcagatagaggttatataatagtgccatagcatagtgaaatttagggcctacgtgatgatccaataaacaatctttacttttataaa-ggaagcctcttt |
99 |
Q |
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| T |
42248350 |
tcagatagaggttatataatagtgccatagcatagtgaaatttagggcctacgtgatgatccaataaacaatctttacttttataaaaggaagcctcttt |
42248251 |
T |
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| Q |
100 |
ttggcttcttgacattgaagactacacactaaacattaattcacacgtgtattattttcttaagagagtggttatccaaaaataaccaaatggaatcatt |
199 |
Q |
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| T |
42248250 |
ttggcttcttgacattgaagactacacactaaacattaattcacacgtgtattattttcttaagagagtggttatccaaaaataaccaaatggaatcatt |
42248151 |
T |
|
| Q |
200 |
tttaggctatagtgatgccatatcaatcctaatcctgatgactattcctaaacttgcagatatatggagacccagaagcagcagatgttgtgtttacctc |
299 |
Q |
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| T |
42248150 |
tttaggctaaagtgatgccatatcaattctaatcctgatgactattcctaaacttgcagatatatggagacccagaagcagcagatgttgtgtttacctc |
42248051 |
T |
|
| Q |
300 |
tggggcagatgttgttgttgttggaataaacatcacaacccaagtgcaacttacaggtgggattgtaattccaattgggaatgatttctctgct |
393 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42248050 |
tggggcagatgttgttgttgttggaataaatatcacaacccaagtgcaacttacaggtgggattgtaattccgattgggaatgatttctctgct |
42247957 |
T |
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