View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9406_low_14 (Length: 371)
Name: NF9406_low_14
Description: NF9406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9406_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 358
Target Start/End: Complemental strand, 25250003 - 25249671
Alignment:
| Q |
18 |
atatagttgactgcaatattttagttgtccatgcttctcatgtgtagaatagaaaccatataagacaaacctagaatatcnnnnnnnnnnnnnnnnnnga |
117 |
Q |
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| T |
25250003 |
atatagttgactgcaatattttagttgtccatgcttctcatgtgtagaaaccataccatataagacaaacctagaatatctttttttt----------ga |
25249914 |
T |
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| Q |
118 |
cagagcctataatatacttttaaaatatcaataaatattagcttaaataatcaa--gtagtcgagttattttctttgccggttaattatttttgtccgat |
215 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
25249913 |
cagagcctagaatatacttttaaaatatcaataaatattagcttaaataatcaattgtagtagagttattttcattgccggttaattatttttgtccgat |
25249814 |
T |
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| Q |
216 |
ataaactttttgtctacgtagaaataaaactactacaaagattctatgggaatactagctaatatatttttaatctattccctcaacatgccaatttatt |
315 |
Q |
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||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25249813 |
ataaactttttgtttacgtagaaagaaaactactacaaagattctatgggaatactagctaatatatttttaatctattccctcaacatgccaatttatt |
25249714 |
T |
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| Q |
316 |
tctaacgtaccacaacatatttgtcatgatccaaaaaagagta |
358 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25249713 |
tctaacgtaccacaacatatttgtcatgatccaaaaaagagta |
25249671 |
T |
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