View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9406_low_16 (Length: 365)
Name: NF9406_low_16
Description: NF9406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9406_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 15 - 348
Target Start/End: Complemental strand, 2948743 - 2948410
Alignment:
| Q |
15 |
tgtctcttttcagatatggaccaatcttcaagacaaacttggttggaagaccagttgtagtgtccacagaccctgatcttaactacttcatattccaaca |
114 |
Q |
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| T |
2948743 |
tgtctcttttcagatatggaccaatcttcaagacaaacttggttggaagaccagttgtagtgtccacagaccctgatcttaactacttcatattccaaca |
2948644 |
T |
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| Q |
115 |
ggaagggaaaatattccagagttggtatccagatacattcacagagatatttgggcaacaaaatgtaggttccttacatggttttatgtataagtacctt |
214 |
Q |
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| T |
2948643 |
ggaagggaaaatattccagagttggtatccagatacattcacagagatatttgggcaacaaaatgtaggttccttacatggttttatgtataagtacctt |
2948544 |
T |
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| Q |
215 |
aagaacatgatgctcaatttgtttggtcctgaaagtcttaaaaagatgatctcagaggttgaacaagcagcctgcagaacattacaacaggcgtcgtgtc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2948543 |
aagaacatgatgctcaatttgtttggtcctgaaagtcttaaaaagatgatctcagaggttgaacaagcagcctgcagaacattacaacaggcgtcgtgtc |
2948444 |
T |
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| Q |
315 |
aggacagcgtcgagctgaaggaagcaacagaaac |
348 |
Q |
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||||||| |||||||||||||||||||||||||| |
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| T |
2948443 |
aggacagtgtcgagctgaaggaagcaacagaaac |
2948410 |
T |
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