View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9406_low_18 (Length: 354)
Name: NF9406_low_18
Description: NF9406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9406_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 49766216 - 49765880
Alignment:
| Q |
1 |
tgctaattctaatggtattgcttctgtgaaccgtgctcaagaccaccaccaccatcaccatcattgcatgaaagagagagtacttagaaggtgtggagga |
100 |
Q |
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| T |
49766216 |
tgctagttctaatggtattgcttctgtgaaccgtgctcaagaccaccaccaccatcaccatcattgcatgaaagagagagtacttagaaggtgtggagga |
49766117 |
T |
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| Q |
101 |
atattcagtggtttcatgatgacatcatcttcatcttcaaattcatctacttcatcttattgggtttcttctaattctgctgatgatgctgtaaatggag |
200 |
Q |
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| T |
49766116 |
atattcagtggtttcatgatgacatcatcttcatcttcaaattcatctacttcatcttattgggtttcttctaattctgctgatgatgctgtaaatggag |
49766017 |
T |
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| Q |
201 |
gaggaaaacaaggttctgttacagtttctcaaaaccgtggtggaaagagttggggttgggctttcgctagtcctatgagagcttttagtagcaaaggatc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49766016 |
gaggaaaacaaggttctgttacagtttctcaaaaccgtggtggaaagagttggggttgggctttcgctagtcctatgagagcttttagtagcaaaggatc |
49765917 |
T |
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| Q |
301 |
ttctaaagagaatcatcagaataatagaagagatatt |
337 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
49765916 |
ttctaaagagaatcatcagaataatagaagagatatt |
49765880 |
T |
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