View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9406_low_20 (Length: 349)
Name: NF9406_low_20
Description: NF9406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9406_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 37257534 - 37257179
Alignment:
| Q |
1 |
acaaacaaacaactcctctagcctctaattcttcttctactcactacttcaaaactacttataaaccctaaaatttcattctccttcttcatctttctac |
100 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37257534 |
acaaacaaacaactcctctaggctctaattcttcttctacttactacttcaaaacttcttataaaccctaaaatttcattctccttcttcaactttctac |
37257435 |
T |
|
| Q |
101 |
aatggcttcttacacatttgtattgatgcttgtggctacactattggttagttccaccattgctcaatctccttcatcatctcctaccatatcacccgtt |
200 |
Q |
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|
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37257434 |
aatggcttcttacacagttgtattgatgcttgtggctacactgttggttagttccactattgctcaatctccttcatcatctccaaccatatcacccgtt |
37257335 |
T |
|
| Q |
201 |
gccactccacccaaatcctctcaggcaccatctccttcagctgtctcaccggtggcatctcctcccatacctgtgaagaacgctccttctcc-------- |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37257334 |
gccactccacccaaatcctctcaggcaccatctccttccgctgtctcaccggtggcatctcctcccgtacctgtgaagaacgctccttctccttcccctc |
37257235 |
T |
|
| Q |
293 |
----ttcctctgactctcccgctgtttctcctgctgttactccatcatccatctct |
344 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37257234 |
ctgcttcctctgactctcccgctgtttctcctgctgttactccatcatccatctct |
37257179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 32 - 205
Target Start/End: Complemental strand, 37238044 - 37237871
Alignment:
| Q |
32 |
ttcttctactcactacttcaaaactacttataaaccctaaaatttcattctccttcttcatctttctacaatggcttcttacacatttgtattgatgctt |
131 |
Q |
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||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||| ||||||||||| || | | |||| ||||||||| |
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| T |
37238044 |
ttcttctactcactacttcaaaacttcttataaatcctaaaatttcattctccttcttcaattttcaacaatggcttcctataaagttgtgttgatgctt |
37237945 |
T |
|
| Q |
132 |
gtggctacactattggttagttccaccattgctcaatctccttcatcatctcctaccatatcacccgttgccac |
205 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37237944 |
gtggctacactatttgttagttccaccattgctcaatctccttcatcatctccaaccatatcacccgttgccac |
37237871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 32 - 205
Target Start/End: Complemental strand, 37253384 - 37253211
Alignment:
| Q |
32 |
ttcttctactcactacttcaaaactacttataaaccctaaaatttcattctccttcttcatctttctacaatggcttcttacacatttgtattgatgctt |
131 |
Q |
| |
|
||||||||| |||| |||||||||| |||||||||||||| ||| |||||||||| ||| ||| |||||||||||| |||||| |||| ||||||||| |
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| T |
37253384 |
ttcttctacacactgcttcaaaacttcttataaaccctaattttttattctccttcatcaaatttttacaatggcttcatacacagttgttttgatgctt |
37253285 |
T |
|
| Q |
132 |
gtggctacactattggttagttccaccattgctcaatctccttcatcatctcctaccatatcacccgttgccac |
205 |
Q |
| |
|
||||||||||||||||||||||| ||| | ||||||||||| || |||||||| |||||||| || |||||||| |
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| T |
37253284 |
gtggctacactattggttagttctaccttcgctcaatctccatcttcatctcccaccatatcccctgttgccac |
37253211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 94 - 172
Target Start/End: Complemental strand, 21187666 - 21187588
Alignment:
| Q |
94 |
tttctacaatggcttcttacacatttgtattgatgcttgtggctacactattggttagttccaccattgctcaatctcc |
172 |
Q |
| |
|
|||||||||||||||| |||| | ||| ||||||||||||||||||||||||||||||||| ||| | ||||||||||| |
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| T |
21187666 |
tttctacaatggcttcctacaaagttgcattgatgcttgtggctacactattggttagttctaccttcgctcaatctcc |
21187588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 61 - 172
Target Start/End: Complemental strand, 27245614 - 27245503
Alignment:
| Q |
61 |
ataaaccctaaaatttcattctccttcttcatctttctacaatggcttcttacacatttgtattgatgcttgtggctacactattggttagttccaccat |
160 |
Q |
| |
|
||||||||||| ||| ||||| | |||||| |||||||||||| ||| |||| | ||| |||||| |||||||||||||||||||||||||| | | | |
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| T |
27245614 |
ataaaccctaatttttaattcttcgtcttcaattttctacaatggtttcctacaaagttgcattgatccttgtggctacactattggttagttctatctt |
27245515 |
T |
|
| Q |
161 |
tgctcaatctcc |
172 |
Q |
| |
|
||||||||||| |
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|
| T |
27245514 |
cgctcaatctcc |
27245503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 37253200 - 37253136
Alignment:
| Q |
231 |
tctccttcagctgtctcaccggtggcatctcctcccatacctgtgaagaacgctccttctccttc |
295 |
Q |
| |
|
||||| || |||| |||||||| ||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
37253200 |
tctccctccgctgactcaccggcggcatctgctcccatacctgtgaagaacgctccatctccttc |
37253136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 184
Target Start/End: Complemental strand, 37233094 - 37232971
Alignment:
| Q |
61 |
ataaaccctaaaatttcattctccttcttcatctttctacaatggcttcttacacatttgtattgatgcttgtggctacactattggttagttccaccat |
160 |
Q |
| |
|
||||||||||| ||||||| || ||||||| ||| ||| |||||||| |||| | |||| ||||||||||||||| || | ||||| ||||||||| | |
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| T |
37233094 |
ataaaccctaatttttcattttcattcttcaaatttttactatggcttcctacaaagttgtgttgatgcttgtggctgcattgttggtgagttccacctt |
37232995 |
T |
|
| Q |
161 |
tgctcaatctccttcatcatctcc |
184 |
Q |
| |
|
|||||||| || || |||||||| |
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| T |
37232994 |
cgctcaatcaccatcgtcatctcc |
37232971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 185
Target Start/End: Complemental strand, 37242415 - 37242324
Alignment:
| Q |
94 |
tttctacaatggcttcttacacatttgtattgatgcttgtggctacactattggttagttccaccattgctcaatctccttcatcatctcct |
185 |
Q |
| |
|
||||||| |||||||| |||| |||| |||||||||||||| |||||||||||||||| ||| |||| | ||||| |||||||||||| |
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| T |
37242415 |
tttctactatggcttcctacatggttgtgttgatgcttgtggcctcactattggttagttctacctttgcacgatctctatcatcatctcct |
37242324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 340
Target Start/End: Complemental strand, 37253106 - 37253049
Alignment:
| Q |
283 |
ctccttctccttcctctgactctcccgctgtttctcctgctgttactccatcatccat |
340 |
Q |
| |
|
||||| || |||| || |||||||||||||| ||||||||| |||||||||||||||| |
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|
| T |
37253106 |
ctcctcctgcttcatccgactctcccgctgtctctcctgctcttactccatcatccat |
37253049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 279
Target Start/End: Complemental strand, 37237860 - 37237812
Alignment:
| Q |
231 |
tctccttcagctgtctcaccggtggcatctcctcccatacctgtgaaga |
279 |
Q |
| |
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||||| || |||| |||||||||||||||||||||| |||||||||||| |
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|
| T |
37237860 |
tctccctccgctgactcaccggtggcatctcctcccgtacctgtgaaga |
37237812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 115
Target Start/End: Complemental strand, 37245464 - 37245426
Alignment:
| Q |
77 |
cattctccttcttcatctttctacaatggcttcttacac |
115 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||| |
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|
| T |
37245464 |
cattctccttcttcatctttctactatggcttcctacac |
37245426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 349
Target Start/End: Complemental strand, 37237751 - 37237718
Alignment:
| Q |
316 |
ctcctgctgttactccatcatccatctctgctcc |
349 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
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|
| T |
37237751 |
ctcctgctgttactccatcatccatctctactcc |
37237718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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