View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9406_low_26 (Length: 284)
Name: NF9406_low_26
Description: NF9406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9406_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 21445397 - 21445149
Alignment:
| Q |
1 |
gcttggagctaaaatccatgggattaaataccgccaaaatctcgaccaattccttagaactagaagtgagccggtgccaatagcggtgccaatagcagtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
21445397 |
gcttggagctaaaatccatgggattaaataccgccaaaatctcgaccaattccttagaactagaagtgagccggtgccaatagc------------agtg |
21445310 |
T |
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| Q |
101 |
gcatctcaagaacccttttgcgcttatccttcgttacttgctgaaaagagtgagaagaaactatcatcaaatggtagagccaaattaagaaaacgttctc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21445309 |
gcatctcaagaacccttttgcgcttatccttcgttacttgcagaaaagagtgagaagaaactatcatcaaatggtagagccaaattaagaaaacgttctc |
21445210 |
T |
|
| Q |
201 |
ttagtattcctgcattaggaaagcatagttcagctgatccaatcctctctgctcctcctca |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||| |
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| T |
21445209 |
ttagtattcctgcattaggaaagcatagttcagctgatccaatcctttctggtgctcctca |
21445149 |
T |
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