View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9406_low_35 (Length: 219)

Name: NF9406_low_35
Description: NF9406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9406_low_35
NF9406_low_35
[»] chr7 (14 HSPs)
chr7 (13-202)||(4862768-4862957)
chr7 (13-202)||(4698238-4698427)
chr7 (19-202)||(4784889-4785072)
chr7 (19-198)||(4817318-4817497)
chr7 (20-194)||(4713121-4713295)
chr7 (13-199)||(4629791-4629977)
chr7 (20-199)||(4652402-4652581)
chr7 (55-198)||(4660684-4660827)
chr7 (59-199)||(4665817-4665957)
chr7 (119-194)||(4854590-4854665)
chr7 (13-104)||(4847069-4847160)
chr7 (116-198)||(4635740-4635822)
chr7 (56-198)||(4671523-4671665)
chr7 (14-199)||(4642586-4642771)
[»] chr4 (1 HSPs)
chr4 (14-198)||(18926788-18926972)


Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 202
Target Start/End: Complemental strand, 4862957 - 4862768
Alignment:
Q  13 tttcgtgttatcaaaagtgggaccaacaggaatgtctatcactcacgtcagcaccgtggtgaagggtagtcttggatatttagatccagaatactacctt 112  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4862957 tttcgggttatcaaaagtgggaccaacaggaatgtctatcactcacgtcagcaccgtggtgaagggtagtcttggatatttagatccagaatactacctt 4862858  T
Q  113 cgtcaaaggttgactctaaaatccgacgtgtattctttcggtgttgtccttcttgaggtgttgtgtgcgagaccaccattggttcgttct 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4862857 cgtcaaaggttgactctaaaatccgacgtgtattctttcggtgttgtccttcttgaggtgttgtgtgcgagaccaccattggttcgttct 4862768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 13 - 202
Target Start/End: Original strand, 4698238 - 4698427
Alignment:
Q  13 tttcgtgttatcaaaagtgggaccaacaggaatgtctatcactcacgtcagcaccgtggtgaagggtagtcttggatatttagatccagaatactacctt 112  Q
    ||||| |||||||||||||||||||||||||||||| || || |||||||||||   ||||||||||||||| || ||||||||||| ||||||||||||    
T  4698238 tttcgggttatcaaaagtgggaccaacaggaatgtcgatgacccacgtcagcactaaggtgaagggtagtctcgggtatttagatcccgaatactacctt 4698337  T
Q  113 cgtcaaaggttgactctaaaatccgacgtgtattctttcggtgttgtccttcttgaggtgttgtgtgcgagaccaccattggttcgttct 202  Q
    |||||||||||||| ||||| ||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||| ||||||||||||    
T  4698338 cgtcaaaggttgaccctaaagtccgacgtgtactcttttggtgttgtgcttcttgaggtattgtgtgcgagaccacctttggttcgttct 4698427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 4784889 - 4785072
Alignment:
Q  19 gttatcaaaagtgggaccaacaggaatgtctatcactcacgtcagcaccgtggtgaagggtagtcttggatatttagatccagaatactaccttcgtcaa 118  Q
    |||||||||||||||||| ||||| ||||| || || || ||||||||  ||||||| |||||||| || ||||| ||||||||||||||| | || |||    
T  4784889 gttatcaaaagtgggacctacagggatgtcgatgacccatgtcagcactatggtgaaaggtagtctcgggtatttggatccagaatactacatgcgacaa 4784988  T
Q  119 aggttgactctaaaatccgacgtgtattctttcggtgttgtccttcttgaggtgttgtgtgcgagaccaccattggttcgttct 202  Q
    |||||||||||||| || || ||||| |||||||||||||| |||||||||||||||||||||||||| || ||||||||||||    
T  4784989 aggttgactctaaagtctgatgtgtactctttcggtgttgtgcttcttgaggtgttgtgtgcgagacccccgttggttcgttct 4785072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 4817318 - 4817497
Alignment:
Q  19 gttatcaaaagtgggaccaacaggaatgtctatcactcacgtcagcaccgtggtgaagggtagtcttggatatttagatccagaatactaccttcgtcaa 118  Q
    |||||||||||||||||| ||||| ||||| || || || ||||||||  ||||||| |||||||| || ||||| ||||||||||||||| | || |||    
T  4817318 gttatcaaaagtgggacctacagggatgtcgatgacccatgtcagcactatggtgaaaggtagtctcgggtatttggatccagaatactacatgcgacaa 4817417  T
Q  119 aggttgactctaaaatccgacgtgtattctttcggtgttgtccttcttgaggtgttgtgtgcgagaccaccattggttcg 198  Q
    || ||||||||||| || || ||||| |||||||||||||| |||||||||||||||||||||||||| || ||||||||    
T  4817418 agattgactctaaagtctgatgtgtactctttcggtgttgtgcttcttgaggtgttgtgtgcgagacccccgttggttcg 4817497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 194
Target Start/End: Original strand, 4713121 - 4713295
Alignment:
Q  20 ttatcaaaagtgggaccaacaggaatgtctatcactcacgtcagcaccgtggtgaagggtagtcttggatatttagatccagaatactaccttcgtcaaa 119  Q
    ||||||||||||||||||||||| || || || ||||| ||||||||  |||||||||||||| | |||||||| |||||||| | |||||| ||  | |    
T  4713121 ttatcaaaagtgggaccaacagggatatcaatgactcatgtcagcactatggtgaagggtagtataggatatttggatccagagtgctacctacgaaaca 4713220  T
Q  120 ggttgactctaaaatccgacgtgtattctttcggtgttgtccttcttgaggtgttgtgtgcgagaccaccattgg 194  Q
     ||||||||| || || |||||||| || ||||| ||||| ||||||||||||||||||||||||||||| ||||    
T  4713221 agttgactcttaagtctgacgtgtactcattcggagttgtgcttcttgaggtgttgtgtgcgagaccacctttgg 4713295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 199
Target Start/End: Complemental strand, 4629977 - 4629791
Alignment:
Q  13 tttcgtgttatcaaaagtgggaccaacaggaatgtctatcactcacgtcagcaccgtggtgaagggtagtcttggatatttagatccagaatactacctt 112  Q
    ||||| |||||| || |||||||| ||||||||  | |  || || ||||||||  |||||||||| || ||||||||||| ||||| ||||||||  |     
T  4629977 tttcgggttatccaaggtgggacctacaggaataacgactacccatgtcagcacgatggtgaaggggagccttggatatttggatcccgaatactatatg 4629878  T
Q  113 cgtcaaaggttgactctaaaatccgacgtgtattctttcggtgttgtccttcttgaggtgttgtgtgcgagaccaccattggttcgt 199  Q
    |  |||||| | ||||||||||| |||||||| || || ||||| || |||||||||||||||||||| |||||||| |||||||||    
T  4629877 ctccaaaggctaactctaaaatctgacgtgtactcgtttggtgtggtgcttcttgaggtgttgtgtgctagaccacctttggttcgt 4629791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 199
Target Start/End: Complemental strand, 4652581 - 4652402
Alignment:
Q  20 ttatcaaaagtgggaccaacaggaatgtctatcactcacgtcagcaccgtggtgaagggtagtcttggatatttagatccagaatactaccttcgtcaaa 119  Q
    ||||| ||||||||||| ||| | |||||||  || || || |||||  ||||||||||||| || || ||||| ||||||||||| ||  | |  ||||    
T  4652581 ttatcgaaagtgggaccgacaaggatgtctacaacccatgttagcacgatggtgaagggtagcctagggtatttggatccagaatattatatgctccaaa 4652482  T
Q  120 ggttgactctaaaatccgacgtgtattctttcggtgttgtccttcttgaggtgttgtgtgcgagaccaccattggttcgt 199  Q
    || | ||||||||||| || ||||| || |||||||| || |||||||||||||||||||| |||||||| |||||||||    
T  4652481 ggctaactctaaaatctgatgtgtactcattcggtgtggtgcttcttgaggtgttgtgtgctagaccacctttggttcgt 4652402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 55 - 198
Target Start/End: Complemental strand, 4660827 - 4660684
Alignment:
Q  55 tcacgtcagcaccgtggtgaagggtagtcttggatatttagatccagaatactaccttcgtcaaaggttgactctaaaatccgacgtgtattctttcggt 154  Q
    ||||||||||||  |||||||||| || ||||| ||||| |||||  |||||||  | |  |||||||| ||||||||||| || ||||| || ||||||    
T  4660827 tcacgtcagcacaatggtgaaggggagccttgggtatttggatccccaatactatatgctccaaaggttaactctaaaatctgaagtgtactcgttcggt 4660728  T
Q  155 gttgtccttcttgaggtgttgtgtgcgagaccaccattggttcg 198  Q
    || || |||||||||||||||||||| || ||||||||||||||    
T  4660727 gtggtgcttcttgaggtgttgtgtgctaggccaccattggttcg 4660684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 59 - 199
Target Start/End: Complemental strand, 4665957 - 4665817
Alignment:
Q  59 gtcagcaccgtggtgaagggtagtcttggatatttagatccagaatactaccttcgtcaaaggttgactctaaaatccgacgtgtattctttcggtgttg 158  Q
    ||||||||  |||||||||| || || |||||||| ||||| ||||| ||  | |  |||||| | ||||||||||| || ||||| || |||||||| |    
T  4665957 gtcagcacgatggtgaaggggagcctcggatatttggatcccgaatattatatgctccaaaggctaactctaaaatctgatgtgtactcgttcggtgtgg 4665858  T
Q  159 tccttcttgaggtgttgtgtgcgagaccaccattggttcgt 199  Q
    | |||||||||||||||||||| |||||||| |||||||||    
T  4665857 tgcttcttgaggtgttgtgtgctagaccacctttggttcgt 4665817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 119 - 194
Target Start/End: Original strand, 4854590 - 4854665
Alignment:
Q  119 aggttgactctaaaatccgacgtgtattctttcggtgttgtccttcttgaggtgttgtgtgcgagaccaccattgg 194  Q
    |||||||||||||| || || ||||| |||||||||| ||| ||||||||| ||||||||||||||||||| ||||    
T  4854590 aggttgactctaaagtctgatgtgtactctttcggtgatgtacttcttgagatgttgtgtgcgagaccacctttgg 4854665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 4847069 - 4847160
Alignment:
Q  13 tttcgtgttatcaaaagtgggaccaacaggaatgtctatcactcacgtcagcaccgtggtgaagggtagtcttggatatttagatccagaat 104  Q
    ||||| ||||||||||||||||||||| || || || || ||||| || |||||  |||||||||||||| | |||||||| ||||||||||    
T  4847069 tttcgggttatcaaaagtgggaccaaccgggatatcaatgactcatgtaagcactatggtgaagggtagtataggatatttggatccagaat 4847160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 116 - 198
Target Start/End: Complemental strand, 4635822 - 4635740
Alignment:
Q  116 caaaggttgactctaaaatccgacgtgtattctttcggtgttgtccttcttgaggtgttgtgtgcgagaccaccattggttcg 198  Q
    |||||| | ||||| ||||| |||||||| || |||||||| || |||||||||||||||||||| || ||||| ||||||||    
T  4635822 caaaggcttactcttaaatcagacgtgtactcattcggtgtggtgcttcttgaggtgttgtgtgctaggccacctttggttcg 4635740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 198
Target Start/End: Complemental strand, 4671665 - 4671523
Alignment:
Q  56 cacgtcagcaccgtggtgaagggtagtcttggatatttagatccagaatactaccttcgtcaaaggttgactctaaaatccgacgtgtattctttcggtg 155  Q
    |||||||||||  ||||||| || || ||||| ||||||||||| || |||||  |    |||||| | ||||||||||| || ||||| || |||||||    
T  4671665 cacgtcagcacaatggtgaaaggaagccttgggtatttagatcctgagtactatatgttccaaaggctaactctaaaatcagatgtgtactcattcggtg 4671566  T
Q  156 ttgtccttcttgaggtgttgtgtgcgagaccaccattggttcg 198  Q
    | || |||||||| ||||||||||| || ||||| ||||||||    
T  4671565 tggtacttcttgaagtgttgtgtgctaggccacctttggttcg 4671523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 199
Target Start/End: Complemental strand, 4642771 - 4642586
Alignment:
Q  14 ttcgtgttatcaaaagtgggaccaacaggaatgtctatcactcacgtcagcaccgtggtgaagggtagtcttggatatttagatccagaatactaccttc 113  Q
    |||| |||||| || |||||||| ||||| || || |  || ||| |||||||  ||||||| || || ||||| ||||||||||| || |||||  |      
T  4642771 ttcgggttatccaaggtgggacctacagggatatcgactacccacatcagcacaatggtgaaaggaagccttgggtatttagatcctgagtactatatgt 4642672  T
Q  114 gtcaaaggttgactctaaaatccgacgtgtattctttcggtgttgtccttcttgaggtgttgtgtgcgagaccaccattggttcgt 199  Q
      |||||| | ||||||||||| || ||||| || |||||||| || |||||||| ||||||||||| || ||||| |||||||||    
T  4642671 tccaaaggctaactctaaaatcagatgtgtactcgttcggtgtggtacttcttgaagtgttgtgtgctaggccacctttggttcgt 4642586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 14 - 198
Target Start/End: Original strand, 18926788 - 18926972
Alignment:
Q  14 ttcgtgttatcaaaagtgggaccaacaggaatgtctatcactcacgtcagcaccgtggtgaagggtagtcttggatatttagatccagaatactaccttc 113  Q
    |||| |||||| || ||||||||||| || || || |  || || ||||||||  |||||||||| |||||||| ||||||||||| || |||||  | |    
T  18926788 ttcgggttatccaaggtgggaccaacggggatatcaactacccatgtcagcacaatggtgaaggggagtcttgggtatttagatcctgagtactatatgc 18926887  T
Q  114 gtcaaaggttgactctaaaatccgacgtgtattctttcggtgttgtccttcttgaggtgttgtgtgcgagaccaccattggttcg 198  Q
      |||||| | || |||||||| |||||||| || |||||||| || ||||||||||| |||||||| || ||||| ||||||||    
T  18926888 tccaaaggcttaccctaaaatctgacgtgtactcattcggtgtggtgcttcttgaggtattgtgtgcaaggccacctttggttcg 18926972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University