View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9406_low_8 (Length: 487)
Name: NF9406_low_8
Description: NF9406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9406_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 1e-88; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 22254176 - 22254341
Alignment:
| Q |
18 |
atcagaaaatgtacatcaaaagaatctatgaaacaaaaacaaaccttatctgaaaattcagacacaacccagttgttgcttcgatcaaacaagaagtggg |
117 |
Q |
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| T |
22254176 |
atcagaaaatgtacatcaaaagaatctatgaaacaaaaacaaaccttatctgaaaattcagacacaacccagttgttgcttcgatcaaacaagaagtggg |
22254275 |
T |
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| Q |
118 |
ttttgtcaaattcgatctaagagcatcggatcttcccagcatcaatcaaaagaactaatctcatca |
183 |
Q |
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| T |
22254276 |
ttttgtcaaattcgatctaagagcatcggatcttcccagcatcaatcaaaagaactaatctcatca |
22254341 |
T |
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Target: chr3; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 234 - 333
Target Start/End: Original strand, 22254383 - 22254482
Alignment:
| Q |
234 |
ttcggaaactttacaagagatcgatgagaattgaatcaaacccagatgagaaaatttaccatatgaagatttagatgtagaaaaaataatgggcatgtgc |
333 |
Q |
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| T |
22254383 |
ttcggaaactttacaagagatcgatgagaattgaatcaaacccagatgagaaaatttaccatatgaagatttagatgtagaaaaaataatgggcatgtgc |
22254482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 383 - 426
Target Start/End: Original strand, 22254533 - 22254576
Alignment:
| Q |
383 |
cagaggatgtgtttttcatcctcttatgttttatgtttatgttt |
426 |
Q |
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| T |
22254533 |
cagaggatgtgtttttcatcctcttatgttttatgtttatgttt |
22254576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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