View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9407_high_1 (Length: 567)
Name: NF9407_high_1
Description: NF9407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9407_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 32532231 - 32532004
Alignment:
| Q |
19 |
attttatctgtataatcgaatatcagatgcatttagaaccataaagagggaagaaggattcagtgcattttacagaggaattgttcctggnnnnnnnctg |
118 |
Q |
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| T |
32532231 |
attttatctgtataatcgaatatcagatgcatttagaaccataaagagggaagaaggattcagtgcattttacagaggaattgttcctggtttttttctg |
32532132 |
T |
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| Q |
119 |
gtatgttgcttgctctttgtatttttcctgtcgatcttaccgccttaaatattaatggaagattacatgtaatatgtggaattgtgcatggttaaaggtc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32532131 |
gtatgttgcttgctctttgtatttttcctgtcgatcttaccgccttaaatattaatggaagattacatgtaatatgtggaattgtgcatggttaaaggtc |
32532032 |
T |
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| Q |
219 |
ttccttcttcaatgaacataatacagta |
246 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
32532031 |
ttccttcttcaatgaacataatacagta |
32532004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 400 - 551
Target Start/End: Complemental strand, 32531827 - 32531676
Alignment:
| Q |
400 |
ttggtaacaatttcgtcaaaaatttaaaattcacgtgacctagctcattacctctatcattatcatcaacatcttagttagaggtataaaatcatttatg |
499 |
Q |
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| T |
32531827 |
ttggtaacaagttcgtcaaaaatttaaaattcacgtgacctagctcattacctctatcattatcatcaacatcttagttagaggtataaaatcatttatg |
32531728 |
T |
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| Q |
500 |
gtccatgagatggtatttgagcctttgatactagagtggttggtgatctgtg |
551 |
Q |
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| T |
32531727 |
gtccatgagatggtatttgagcctttgatactagagtggttggtgatctgtg |
32531676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 302 - 404
Target Start/End: Complemental strand, 32532005 - 32531903
Alignment:
| Q |
302 |
tacaacacagtggatccttcattcaatttctgctaaacgttacagaatttatttgtcattttattgtcatatgactaaaacacatgtcatagtatgaatt |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32532005 |
tacaacacagtggatccttcattcaatttctgctaaacgttacagaatttatttgtcattttattgtcatatgactaaaacacatgtcatagtatgaatt |
32531906 |
T |
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| Q |
402 |
ggt |
404 |
Q |
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||| |
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| T |
32531905 |
ggt |
32531903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 20 - 207
Target Start/End: Complemental strand, 32520437 - 32520256
Alignment:
| Q |
20 |
ttttatctgtataatcgaatatcagatgcatttagaaccataaagagggaagaaggattcagtgcattttacagaggaattgttcctggnnnnnnnctgg |
119 |
Q |
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||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||| ||||||||||| |||| |
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| T |
32520437 |
ttttatctgtaaaataaaatatcagatgcatttaggaccataaagagggaagaaggatttagtgcactttacagagggattgttcctgg------tctgg |
32520344 |
T |
|
| Q |
120 |
tatgttgcttgctctttgtatttttcctgtcgatcttaccgccttaaatattaatggaagattacatgtaatatgtggaattgtgcat |
207 |
Q |
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||||||||| |||||| ||||||||||||| |||||| | | |||| ||| ||||||||| || |||||||||||||||||||| |
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| T |
32520343 |
tatgttgctggctcttgttatttttcctgtcaatcttaacactgaaaattataacggaagattatatataatatgtggaattgtgcat |
32520256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 32547140 - 32547052
Alignment:
| Q |
20 |
ttttatctgtataatcgaatatcagatgcatttagaaccataaagagggaagaaggattcagtgcattttacagaggaattgttcctgg |
108 |
Q |
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||||||||||| ||| |||||||||||||||||| ||||||| ||||||||||||||| |||||| |||||||||| ||||||||||| |
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| T |
32547140 |
ttttatctgtaaaataaaatatcagatgcatttaggaccataatgagggaagaaggatttagtgcactttacagagggattgttcctgg |
32547052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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