View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9407_high_3 (Length: 272)

Name: NF9407_high_3
Description: NF9407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9407_high_3
NF9407_high_3
[»] chr4 (12 HSPs)
chr4 (18-265)||(38145613-38145860)
chr4 (90-219)||(36107958-36108087)
chr4 (23-218)||(38149468-38149663)
chr4 (90-168)||(21482741-21482819)
chr4 (79-167)||(38086358-38086446)
chr4 (79-150)||(36080163-36080234)
chr4 (90-219)||(36100699-36100828)
chr4 (80-149)||(37954200-37954269)
chr4 (79-260)||(38072755-38072936)
chr4 (92-167)||(38058520-38058595)
chr4 (92-167)||(38061859-38061934)
chr4 (90-156)||(34971558-34971624)
[»] chr2 (3 HSPs)
chr2 (20-260)||(11786962-11787202)
chr2 (92-213)||(11803584-11803705)
chr2 (95-147)||(11917650-11917702)
[»] chr6 (1 HSPs)
chr6 (90-168)||(6838770-6838848)


Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 265
Target Start/End: Complemental strand, 38145860 - 38145613
Alignment:
Q  18 cagtaaaaactgtcactgttggtggaacaggaacaagctttatcttccaccaaagaagtataccaaagcttccacctccaccacctcttatagcccaaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38145860 cagtaaaaactgtcactgttggtggaacaggaacaagctttatcttccaccaaagaagtataccaaagcttccacctccaccacctcttatagcccaaaa 38145761  T
Q  118 tagatcctctcccatggcttttctgtcaagaatgttacccttcgcatcaacgattcgagcatctaagacattatcaactccaagaccatattttctcatc 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  38145760 tagatcctctcccatggcttttctgtcaagaatgttacccttcgcatcaacgattcgagcatctaagacattatcaacaccaagaccatattttctcatc 38145661  T
Q  218 aatgttccatatgcacctcctgttatgtgtccaccaacacctatgctt 265  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38145660 aatgttccatatgcacctcctgttatgtgtccaccaacacctaagctt 38145613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 90 - 219
Target Start/End: Complemental strand, 36108087 - 36107958
Alignment:
Q  90 cacctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaatgttacccttcgcatcaacgattcgagcatctaagacatt 189  Q
    |||| ||||||||||||||||||||||| ||||| |||||||| | |||||| |||||||| ||||||||  ||||||| |||   ||||| |  | |||    
T  36108087 caccaccaccacctcttatagcccaaaaaagatcttctcccattgattttctatcaagaatattacccttaacatcaaccatttttgcatcaataatatt 36107988  T
Q  190 atcaactccaagaccatattttctcatcaa 219  Q
    ||||||   ||||||| |||||||||||||    
T  36107987 atcaacagaaagaccaaattttctcatcaa 36107958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 218
Target Start/End: Complemental strand, 38149663 - 38149468
Alignment:
Q  23 aaaactgtcactgttggtggaacaggaacaagctttatcttccaccaaagaagtataccaaagcttccacctccaccacctcttatagcccaaaatagat 122  Q
    ||||||||||| |||  ||| |||||||| |  || ||||||||||| ||||  |  || ||||| || ||||| || |||||||| ||||||||||| |    
T  38149663 aaaactgtcacagtttttggcacaggaactaatttgatcttccaccagagaataactccgaagctacctcctccgcctcctcttattgcccaaaataggt 38149564  T
Q  123 cctctcccatggcttttctgtcaagaatgttacccttcgcatcaacgattcgagcatctaagacattatcaactccaagaccatattttctcatca 218  Q
    | |||||||| ||||| ||||||||||| || || || |||||||| |||||||| || |  || || || || ||||| ||||| ||||||||||    
T  38149563 cttctcccattgctttcctgtcaagaatttttccattagcatcaacaattcgagcgtcaacaacgttgtctacaccaaggccatactttctcatca 38149468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 90 - 168
Target Start/End: Complemental strand, 21482819 - 21482741
Alignment:
Q  90 cacctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaatgttacccttcgcatcaac 168  Q
    |||| ||||||||||||||||||||||| ||||| |||||||| | |||||| ||||| || ||||| ||| |||||||    
T  21482819 caccaccaccacctcttatagcccaaaaaagatcttctcccattgattttctatcaaggatattaccattcacatcaac 21482741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 167
Target Start/End: Complemental strand, 38086446 - 38086358
Alignment:
Q  79 accaaagcttccacctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaatgttacccttcgcatcaa 167  Q
    |||||| ||| | |||||||||||||| ||||||||||| | |||||| ||||| |||| |||||||||||   |||||||| ||||||    
T  38086446 accaaaacttgctcctccaccacctctaatagcccaaaagaaatcctcacccattgcttctctgtcaagaaacctacccttcacatcaa 38086358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 150
Target Start/End: Complemental strand, 36080234 - 36080163
Alignment:
Q  79 accaaagcttccacctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaat 150  Q
    |||||| ||| |||| |||||||| |||||||||||||||| ||| |||||||| | |||||| ||||||||    
T  36080234 accaaaacttgcaccaccaccaccccttatagcccaaaataaatcttctcccattgattttctatcaagaat 36080163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 219
Target Start/End: Complemental strand, 36100828 - 36100699
Alignment:
Q  90 cacctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaatgttacccttcgcatcaacgattcgagcatctaagacatt 189  Q
    |||| |||||||| |||||||||||||||||||| |||||||| |  ||||| ||||| || ||||| ||  ||||||| |||   ||||| | || |||    
T  36100828 caccaccaccaccccttatagcccaaaatagatcttctcccattgactttctatcaaggatattaccattgacatcaacaatttttgcatcaatgatatt 36100729  T
Q  190 atcaactccaagaccatattttctcatcaa 219  Q
    |||||    ||||||| |||||||||||||    
T  36100728 atcaatagaaagaccaaattttctcatcaa 36100699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 149
Target Start/End: Complemental strand, 37954269 - 37954200
Alignment:
Q  80 ccaaagcttccacctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaa 149  Q
    ||||||||| | |||||||| ||||| ||||||||||| |||||||| ||||| | || |||||||||||    
T  37954269 ccaaagcttgctcctccacctcctctaatagcccaaaacagatcctcacccatcgattctctgtcaagaa 37954200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 260
Target Start/End: Complemental strand, 38072936 - 38072755
Alignment:
Q  79 accaaagcttccacctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaatgttacccttcgcatcaacgattcgagca 178  Q
    |||||| ||| | |||||||||||||| ||||||||||| | ||| || ||||| |||| |||||||||||   |||||||| ||||||  ||  |||||    
T  38072936 accaaaacttgctcctccaccacctctaatagcccaaaacaaatcttcacccattgcttctctgtcaagaaacctacccttcacatcaattatgtgagca 38072837  T
Q  179 tctaagacattatcaactccaagaccatattttctcatcaatgttccatatgcacctcctgttatgtgtccaccaacaccta 260  Q
    || | ||| |||||  |  ||||||| ||||| | || ||| ||||||||  |||| ||  | | |||||||||||||||||    
T  38072836 tcaatgacgttatcggccgcaagaccgtatttacgcaacaaggttccatagccaccaccactgaagtgtccaccaacaccta 38072755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 167
Target Start/End: Complemental strand, 38058595 - 38058520
Alignment:
Q  92 cctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaatgttacccttcgcatcaa 167  Q
    |||||||||||||| ||||||||||| | ||| || ||||| |||| |||||||||||   |||||||| ||||||    
T  38058595 cctccaccacctctaatagcccaaaacaaatcttcacccattgcttctctgtcaagaaacctacccttcacatcaa 38058520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 167
Target Start/End: Original strand, 38061859 - 38061934
Alignment:
Q  92 cctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaatgttacccttcgcatcaa 167  Q
    |||||||| ||||| ||||||||||| | |||||| ||||| |||| |||||||||||   |||||||| ||||||    
T  38061859 cctccacctcctctaatagcccaaaaaaaatcctcacccattgcttctctgtcaagaaacctacccttcacatcaa 38061934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 156
Target Start/End: Original strand, 34971558 - 34971624
Alignment:
Q  90 cacctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaatgttacc 156  Q
    |||| ||||||||||| ||||||||||| ||||| |||||||| |  ||||| |||||||| |||||    
T  34971558 caccaccaccacctctgatagcccaaaagagatcttctcccattgactttctatcaagaatattacc 34971624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 7e-55; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 20 - 260
Target Start/End: Original strand, 11786962 - 11787202
Alignment:
Q  20 gtaaaaactgtcactgttggtggaacaggaacaagctttatcttccaccaaagaagtataccaaagcttccacctccaccacctcttatagcccaaaata 119  Q
    |||||||| ||||| |||  ||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| |    
T  11786962 gtaaaaaccgtcacggtttttggaacaggaacaagttttatcttccaccaaagaagaataccaaaacttccacctccaccacctctaatagcccaaaaga 11787061  T
Q  120 gatcctctcccatggcttttctgtcaagaatgttacccttcgcatcaacgattcgagcatctaagacattatcaactccaagaccatattttctcatcaa 219  Q
      ||||| ||||| | |||||| || ||||| || || |||||||| || |||   || || |  ||||||||| ||||||||||||| ||||||||||     
T  11787062 attcctcccccatagattttctatcgagaatatttccgttcgcatcgactatttttgcgtcgagaacattatcagctccaagaccatactttctcatcat 11787161  T
Q  220 tgttccatatgcacctcctgttatgtgtccaccaacaccta 260  Q
     | ||||||||||||||||||||||||||||||||||||||    
T  11787162 ggatccatatgcacctcctgttatgtgtccaccaacaccta 11787202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 213
Target Start/End: Original strand, 11803584 - 11803705
Alignment:
Q  92 cctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaatgttacccttcgcatcaacgattcgagcatctaagacattat 191  Q
    |||||||| |||||||||||||||||||||||||| |||||   |||||| |  || || || || ||  |||| || ||| ||||||| |  |||||||    
T  11803584 cctccacctcctcttatagcccaaaatagatcctcacccatcaattttctatttaggatctttccattaacatctaccatttgagcatcaattacattat 11803683  T
Q  192 caactccaagaccatattttct 213  Q
    || || ||||||||||||||||    
T  11803684 cagctgcaagaccatattttct 11803705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 147
Target Start/End: Complemental strand, 11917702 - 11917650
Alignment:
Q  95 ccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaag 147  Q
    ||||||||||||||||||||||| ||||| |||||||| | |||||| |||||    
T  11917702 ccaccacctcttatagcccaaaaaagatcttctcccattgattttctatcaag 11917650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 90 - 168
Target Start/End: Complemental strand, 6838848 - 6838770
Alignment:
Q  90 cacctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaatgttacccttcgcatcaac 168  Q
    |||| |||||||||||||| |||||||| ||||| |||||||| | |||||| |||||||| ||||||||  |||||||    
T  6838848 caccaccaccacctcttatggcccaaaaaagatcttctcccattgattttctatcaagaatattacccttaacatcaac 6838770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University