View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9407_low_6 (Length: 377)
Name: NF9407_low_6
Description: NF9407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9407_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 109 - 369
Target Start/End: Original strand, 51201485 - 51201743
Alignment:
| Q |
109 |
ggcataaacatgagtttacatctagaaaagagacgcatctctatgcactagtaggtgaaatccggtttttggctttatttggagctttcaacacattcga |
208 |
Q |
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| T |
51201485 |
ggcataaacatgagtttacatctagaaaagagacgcatctctatgcactagtaggtaaaatccggtttttggctttatttggagctttcaacacattcga |
51201584 |
T |
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| Q |
209 |
atattccttttttcgcagaagcaaagttaattaatcacaactaacagccataaactatgcgcaaaaagtttacaagatcaataaatccagcaagaacaat |
308 |
Q |
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| T |
51201585 |
atattccttttttcgcagaagcaaagttaattaat--caactaacagccataaactatgcgcaaaaagtttacaagatcaataaatccagcaagaacaat |
51201682 |
T |
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| Q |
309 |
ttgttattaaaaacagcagctcaataatacaacagctcaagacaaggattcaccaacacga |
369 |
Q |
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| T |
51201683 |
ttgttattaaaaacagcagctcaataatacaacagctcaagacaaggattcaccaacacga |
51201743 |
T |
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