View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9408_low_10 (Length: 340)
Name: NF9408_low_10
Description: NF9408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9408_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 16 - 141
Target Start/End: Complemental strand, 17725005 - 17724880
Alignment:
| Q |
16 |
cacaccaatcaacataaatcaattcaacagttctttcatgtcgaccaaaattatgcaatgatccaaacagaaaaattgattatcaagcatcatgagaatg |
115 |
Q |
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| T |
17725005 |
cacaccaatcaacatatatcaattcaacagttcttccatgtcgaccaaaattatgcaatgatccaaacacaaaaattgacaatcaagcatcatgagaatg |
17724906 |
T |
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| Q |
116 |
ttgcactacattccaaaattttacat |
141 |
Q |
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| T |
17724905 |
ttgcactacattccaaaattttacat |
17724880 |
T |
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Target: chr4; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 243 - 340
Target Start/End: Complemental strand, 17724777 - 17724680
Alignment:
| Q |
243 |
tctagatatttccgcaaccatcaacacgttgcatttgccttaatcaacgaacgcatcttccgccgaaataaccgatcctttttatatacaacagtttc |
340 |
Q |
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| T |
17724777 |
tctagatatttccgcaaccatcaacacgttgcatttgccttaatcaacgaacgcatcttctgccgaaataaccgatcctttttatatacaacagtttc |
17724680 |
T |
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