View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9408_low_15 (Length: 272)
Name: NF9408_low_15
Description: NF9408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9408_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 248
Target Start/End: Original strand, 11398228 - 11398460
Alignment:
| Q |
16 |
taatatacctcttctaaccaatgtatcaagatcaaatgtcttctcaagatgtgatcttaatagtgaaattgtctcatctgctcaatcataaataaaacat |
115 |
Q |
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| T |
11398228 |
taatatacctcttctaaccaatgtatcaagatcaaatgtcttctcaagatgtgatcttaacattgaaattgtctcatctgctcaatcataaataaaacat |
11398327 |
T |
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| Q |
116 |
caaaaataagatttcattgactaaattatatagtgtgtgtacagagtattgaaattaaaattttattcattaattatatagtatgcatttgtgttggcta |
215 |
Q |
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| T |
11398328 |
caaaaataagatttcattgactaaattatatagtgtgtgtacagagtattgaaattaaaattttattcattaattatatagtgtgcatgtgtgttggcta |
11398427 |
T |
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| Q |
216 |
tgataatatggtttattaaagagacataaatac |
248 |
Q |
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| T |
11398428 |
cgataatatggtttattaaagagagataaatac |
11398460 |
T |
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