View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9408_low_17 (Length: 255)
Name: NF9408_low_17
Description: NF9408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9408_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 239
Target Start/End: Original strand, 52557859 - 52558093
Alignment:
| Q |
7 |
gaagcagagattacaggacaagatacagttggttcccattgatctacaagacagaccttcttggtacaaggacaaagtctacccaaccaacaaggttatt |
106 |
Q |
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| T |
52557859 |
gaagcagggattgcaggacaagatacagttggttcccattgatctacaagacagaccttcttggtacaaggacaaagtccacccaaccaacaaggttatt |
52557958 |
T |
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| Q |
107 |
tatccttataactttgtgccaaaaccatg--atgttttgttgtggaaatttaagtgtaccacattctaatggtgatttttatttacttatttatgtattt |
204 |
Q |
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| T |
52557959 |
tatccttataactttgtgccaaaaccatgatatgttttgttgtggaaattcaagtgtaccacattctaatagtgatttttatttacttatttatgtattt |
52558058 |
T |
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| Q |
205 |
ccatttccaggttccatctcttgaacacaataatg |
239 |
Q |
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| T |
52558059 |
ccatttccaggttccatctcttgaacacaataatg |
52558093 |
T |
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