View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9408_low_22 (Length: 241)
Name: NF9408_low_22
Description: NF9408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9408_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 4 - 231
Target Start/End: Original strand, 24245204 - 24245431
Alignment:
| Q |
4 |
acatcagttggagtaatcaatctatatattatcattttcatattatttgtagacttaatgaggtgcgccacttcatattatcattttattattaagttct |
103 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
24245204 |
acatcagttggagtaatcaatctataaattatcattttcatattatatgtagacttaatgaggtaggccacttcagattatcattttattattaagttct |
24245303 |
T |
|
| Q |
104 |
tgaagttgggtgtcaatcacttgataaaataactcaacaccaaagtgaaaaagagaagtagaaaaagttgattgttttaacctttatttctcttttttca |
203 |
Q |
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|||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
24245304 |
tgaagttgggtgtcaatcacttgataaaataactgaactccaaagtgaaaaatagaagtagaaaaagttgattgttttaagctttatttctcttttttca |
24245403 |
T |
|
| Q |
204 |
ctaaccaccggatgctttgatttctttg |
231 |
Q |
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|||||||| |||||||| |||||||||| |
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| T |
24245404 |
ctaaccactggatgcttcgatttctttg |
24245431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 4 - 231
Target Start/End: Complemental strand, 11490101 - 11489874
Alignment:
| Q |
4 |
acatcagttggagtaatcaatctatatattatcattttcatattatttgtagacttaatgaggtgcgccacttcatattatcattttattattaagttct |
103 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
11490101 |
acattagttggagtaatcaatctataaattatcattttcatattatatgtagacttaatgaggtaggccacttcagattatcattttattattaagttct |
11490002 |
T |
|
| Q |
104 |
tgaagttgggtgtcaatcacttgataaaataactcaacaccaaagtgaaaaagagaagtagaaaaagttgattgttttaacctttatttctcttttttca |
203 |
Q |
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|||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
11490001 |
tgaagttgggtgtcaatcacttgataaaataactgaactccaaagtgaaaaatagaagtagtaaaagttgattgttttaagctttatttctcttttttca |
11489902 |
T |
|
| Q |
204 |
ctaaccaccggatgctttgatttctttg |
231 |
Q |
| |
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|||||||| |||||||| |||||||||| |
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| T |
11489901 |
ctaaccactggatgcttcgatttctttg |
11489874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 4 - 231
Target Start/End: Original strand, 13779164 - 13779391
Alignment:
| Q |
4 |
acatcagttggagtaatcaatctatatattatcattttcatattatttgtagacttaatgaggtgcgccacttcatattatcattttattattaagttct |
103 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||| ||||||||||||| |||||||| |||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
13779164 |
acatcatttggagtaatcaatctataaattataattttcatattatatgtagactaaatgaggtaggccacttcagattatcattttattattaagttct |
13779263 |
T |
|
| Q |
104 |
tgaagttgggtgtcaatcacttgataaaataactcaacaccaaagtgaaaaagagaagtagaaaaagttgattgttttaacctttatttctcttttttca |
203 |
Q |
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|
|||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
13779264 |
tgaagttgggtgtcaatcacttgataaaataactgaactccaaagtgaaaaatagaagtagaaaaagttgattgttttaagctttatttctcttttttca |
13779363 |
T |
|
| Q |
204 |
ctaaccaccggatgctttgatttctttg |
231 |
Q |
| |
|
|||||||| |||||||| |||||||||| |
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|
| T |
13779364 |
ctaaccactggatgcttcgatttctttg |
13779391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 4 - 231
Target Start/End: Original strand, 32219371 - 32219598
Alignment:
| Q |
4 |
acatcagttggagtaatcaatctatatattatcattttcatattatttgtagacttaatgaggtgcgccacttcatattatcattttattattaagttct |
103 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||| ||||||| || ||||| |||||||||||||||||||||||| |
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| T |
32219371 |
acatcagttgaagtaatcaatctataaattatcattttcatattatctgtagacttcatgaggtaggctgcttcagattatcattttattattaagttct |
32219470 |
T |
|
| Q |
104 |
tgaagttgggtgtcaatcacttgataaaataactcaacaccaaagtgaaaaagagaagtagaaaaagttgattgttttaacctttatttctcttttttca |
203 |
Q |
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|
|||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
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| T |
32219471 |
tgaagttgtgtgtcaatcacttgataaaatacctcaactccaaagtgaaaaagagaagtagaaaaaattgattgttttaacctttatttctcttttttaa |
32219570 |
T |
|
| Q |
204 |
ctaaccaccggatgctttgatttctttg |
231 |
Q |
| |
|
||||||||||||| ||| |||||||||| |
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|
| T |
32219571 |
ctaaccaccggatacttcgatttctttg |
32219598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 4 - 231
Target Start/End: Original strand, 19894055 - 19894282
Alignment:
| Q |
4 |
acatcagttggagtaatcaatctatatattatcattttcatattatttgtagacttaatgaggtgcgccacttcatattatcattttattattaagttct |
103 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||| || |||||| ||| |||||| ||||||||| |||||||||||||||||||||||| |
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| T |
19894055 |
acatcagtaggagtaatcaatctataaattatcattttcatataatatgtagatttagtgaggtaggccacttcagattatcattttattattaagttct |
19894154 |
T |
|
| Q |
104 |
tgaagttgggtgtcaatcacttgataaaataactcaacaccaaagtgaaaaagagaagtagaaaaagttgattgttttaacctttatttctcttttttca |
203 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
19894155 |
tgaagttgggtgtcaatgacttgataaaataacttaactccaaagtgaaaaatagaagtagaaaaagttgattgttttaagctttatttctcttttttca |
19894254 |
T |
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| Q |
204 |
ctaaccaccggatgctttgatttctttg |
231 |
Q |
| |
|
||||||| |||||||| |||||||||| |
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|
| T |
19894255 |
ctaaccattggatgcttcgatttctttg |
19894282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 88 - 212
Target Start/End: Complemental strand, 18168896 - 18168776
Alignment:
| Q |
88 |
tttattattaagttcttgaagttgggtgtcaatcacttgataaaataactcaacaccaaagtgaaaaagagaagtagaaaaagttgattgttttaacctt |
187 |
Q |
| |
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||||||||||||||||||||| || |||||||||||||| ||||||| || ||| | ||||||||||||||| ||||||||||| |||||||||| |
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| T |
18168896 |
tttattattaagttcttgaaggtgtgtgtcaatcacttggtaaaataccttaacttcgaagtgaaaaagagaattagaaaaagttt----ttttaacctt |
18168801 |
T |
|
| Q |
188 |
tatttctcttttttcactaaccacc |
212 |
Q |
| |
|
||| ||||||||||||||||||||| |
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|
| T |
18168800 |
tatatctcttttttcactaaccacc |
18168776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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