View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9408_low_29 (Length: 218)

Name: NF9408_low_29
Description: NF9408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9408_low_29
NF9408_low_29
[»] chr7 (2 HSPs)
chr7 (153-214)||(5960828-5960892)
chr7 (153-216)||(43845725-43845791)
[»] chr6 (1 HSPs)
chr6 (153-214)||(6826727-6826791)
[»] scaffold0291 (1 HSPs)
scaffold0291 (153-212)||(19224-19286)
[»] chr4 (1 HSPs)
chr4 (153-196)||(36381257-36381302)


Alignment Details
Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 5960892 - 5960828
Alignment:
Q  153 ttcttcctttctcagatagctttccacct---tcccccattatcatcgaagccacctctccctcc 214  Q
    |||||||||||||||||||||||||||||   ||||||||||||||||||||||||||| |||||    
T  5960892 ttcttcctttctcagatagctttccaccttcctcccccattatcatcgaagccacctcttcctcc 5960828  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 216
Target Start/End: Complemental strand, 43845791 - 43845725
Alignment:
Q  153 ttcttcctttctcagatagctttccaccttcc---cccattatcatcgaagccacctctccctccca 216  Q
    |||||||||||||| | | |||||||||||||   ||||| |||||||||||||||||||| |||||    
T  43845791 ttcttcctttctcatacaactttccaccttcctcccccataatcatcgaagccacctctccttccca 43845725  T

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Target: chr6 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 6826727 - 6826791
Alignment:
Q  153 ttcttcctttctcagatagctttccacct---tcccccattatcatcgaagccacctctccctcc 214  Q
    |||||||||||||||||||||||||||||   ||||||||||||||||||||||||||| |||||    
T  6826727 ttcttcctttctcagatagctttccaccttcctcccccattatcatcgaagccacctcttcctcc 6826791  T

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Target: scaffold0291 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 19286 - 19224
Alignment:
Q  153 ttcttcctttctcagatagctttccaccttcc---cccattatcatcgaagccacctctccct 212  Q
    ||||||||||||||| ||||||||||||||||   ||||||||||||||||||||||||||||    
T  19286 ttcttcctttctcaggtagctttccaccttcctcccccattatcatcgaagccacctctccct 19224  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 196
Target Start/End: Original strand, 36381257 - 36381302
Alignment:
Q  153 ttcttcctttctcagatagctttccaccttc--ccccattatcatc 196  Q
    |||||||||||||| ||||||||||||||||  |||||||||||||    
T  36381257 ttcttcctttctcatatagctttccaccttcctccccattatcatc 36381302  T

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