View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9408_low_3 (Length: 522)
Name: NF9408_low_3
Description: NF9408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9408_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 133 - 263
Target Start/End: Complemental strand, 43148869 - 43148739
Alignment:
| Q |
133 |
tggcagaggttcaaaatgtttctaatttacgcagataaatcacatggtaattaggaagaccagatcaccagataaaagatatgctaggttcacacaataa |
232 |
Q |
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| T |
43148869 |
tggcagaggtgcaaaatgtttctaatttacacagataaatcacatggcaattcggaaaatcagatcaccagaaaaaagggatgccaggttcacacaataa |
43148770 |
T |
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| Q |
233 |
acaaaataacttagataaaaaggttagattc |
263 |
Q |
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| T |
43148769 |
acaaaatgactaagataaaaaggttagattc |
43148739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 43149166 - 43149064
Alignment:
| Q |
137 |
agaggttcaaaatgtttctaatttacgcagataaatcacatggta---attaggaagaccagatcaccagataaaagatatgctaggttcacacaataaa |
233 |
Q |
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| T |
43149166 |
agaggttcaaaataattttattttacacagataaatcgcatggcagcaattaggaaaactagatcaccagataaaagagagaccaggttcacacaataaa |
43149067 |
T |
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| Q |
234 |
caa |
236 |
Q |
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| T |
43149066 |
caa |
43149064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 287 - 354
Target Start/End: Complemental strand, 12073212 - 12073145
Alignment:
| Q |
287 |
tttaactttggtgatagaatttcattatgtttttcagcacaaacatgaattgaagggaatgttcctct |
354 |
Q |
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| T |
12073212 |
tttaactttggtgatagaatttcataatgtttttcagctcaaacatgaattgaagggaatgttcctct |
12073145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 433 - 499
Target Start/End: Complemental strand, 12073044 - 12072979
Alignment:
| Q |
433 |
tcaatttaatttacaaagaaaattaatttaattcgatagagaaaattacccaatttccatataaaat |
499 |
Q |
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| T |
12073044 |
tcaatttaattta-aaagaaaattgattgaattccatagagaaatttacccaatttccatataaaat |
12072979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 437 - 505
Target Start/End: Complemental strand, 26891536 - 26891469
Alignment:
| Q |
437 |
tttaatttacaaagaaaattaatttaattcgatagagaaaattacccaatttccatataaaattgatgt |
505 |
Q |
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| T |
26891536 |
tttaatttacaaagtaa-ttaatttaattcgatagagaaaattacccaatttccatataaaattgatgt |
26891469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 26891633 - 26891597
Alignment:
| Q |
318 |
tttcagcacaaacatgaattgaagggaatgttcctct |
354 |
Q |
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| T |
26891633 |
tttcagcacaaacatgaattgaagggaatgttcctct |
26891597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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