View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9408_low_4 (Length: 459)
Name: NF9408_low_4
Description: NF9408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9408_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 47053706 - 47054143
Alignment:
| Q |
1 |
acacacgagccaagctggaagagcacacactcttctctaagaagaaactaaaccctaatagagcttagggaacttagacgacgctgagttatgaaattct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
47053706 |
acacacgagccaagctggaagagcacacactcttctctaagaagaaactaaaccctaacagagcttagggaacttagacgacgctgagttatgaaattct |
47053805 |
T |
|
| Q |
101 |
aagtttctaaccaatgttatcttctgagaaacaatcactaagctttctccaaacattggcagcttcatcagtctacaaaatgcttgtggcagcgctagct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47053806 |
aagtttctaaccaatgttatcttctgagaaacaatcactaagctttctccaaacattggcagcttcatcagtctacaaaatgcttgtggcagcgctagct |
47053905 |
T |
|
| Q |
201 |
gacatgcaatgaccgactcacaaaagcaccaacaggtttcatcttttccatttgtccaaggtagaggcatcatagtaaagttcctaaatagtttatttct |
300 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
47053906 |
gacacgcaatgaccgactcacaaaagcaccaacaggtttcatcttttccatttgtccaaggtagaggcatcatagtaaagttcctaaatagattatttct |
47054005 |
T |
|
| Q |
301 |
actttatagggacatagtcatggcacatgatcaacactaaaaattttaaccttgaagcattggaaagtaattaggagggaatggttttcatctgggtgag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47054006 |
actttatagggacatagtcatggcacatgatcaacactaaaatttttaaccttgaagcattggaaagtaattaggagggaatggttttcatctgggtgag |
47054105 |
T |
|
| Q |
401 |
aatgtagagaagaaaggggacgaaggtgatagaagtag |
438 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
47054106 |
aatgtagagaagaaaggggacgaaggtgatagaagtag |
47054143 |
T |
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